I completely agree here, an integrated total platform would be immensely
useful.
I think that the problem is not necessarily all that far from a solution-
currently there is a collaborative computing project for NMR (CCPN)
http://www.bio.cam.ac.uk/nmr/ccp/
The core of this program is the data mod
Dear Rajarshi Guha,
You could at least try to reconfigure Robert Campbell's Color-by-B-factor
script. It assigns each atom its own color according to another value.
http://www.rubor.de/bioinf/pymol_tips.html#bfac
Kristian
On Thu, Dec 12, 2002 at 10:33:47AM +, Jules Jacobsen wrote:
> I completely agree here, an integrated total platform would be immensely
> useful.
> I think that the problem is not necessarily all that far from a solution-
> currently there is a collaborative computing project for NMR (CCPN)
>
>
Jules Jacobsen wrote:
>
... stuff deleted
> The core of this program is the data model in which each atom in a
> molecule is defined. The next layer are the conversion scripts which take
> the molecule data from the model and pipe them out to whatever format is
> needed for the various data manipu
Hi again,
Ok, so the license is available at
http://www.bio.cam.ac.uk/nmr/ccp/project/about_ccpn/licensing/licensing.html
Unfortunately, this looks quite incompatible to the GPL:
(2) Conditions for DISTRIBUTION of SOFTWARE to MEMBERS
(2.1) An individual or ORGANISATION must be a MEMBER of
Is it possible to output a Pymol file that Povray can read using windows?
Also is it possible to add lights into a Pymol file?
Thanks,
Kristl
Hi Kristl,
Use "ray renderer=1" instead of a simple "ray".
The raytracing will use Povray if well installed and create a pov file.
Hope that it helps
Cheers
Virgile
Dear Pymolers,
I am sure this has been discussed previously but I can¹t find the response
anywhere. How do you alter the light settings to allow you to change the
direction of incoming light (and corresponding shadows). I am generating
images of a deep active site pocket in a slab view and I nee
You can go to Settings - Edit all and change the vetor of the light ...
you may also want to increase direct -- light coming from camera shot or
ambient light.
Check out pg 32 and 33 in the online manual (Ray-Tracing section).
Do you know if I can add an additional light and how to do that?
Thank
Hi!
I think the comments below are right on the money.
I believe that a molecular modeling package powered by Python is a great idea,
particularly for those who would like to teach computational chemistry.
For example, many popular modeling packages allow the students to perform
simulations usin
Dear Pymolers,
After my last round question on lighting it became clear that the relevant
setting for positing the light source for the ray traced image was ³light².
There are three parameters to be set with the ³light² setting, but it is not
clear what each value refers to (is it X,Y,Z for the po
Kelley,
syntax is something like this:
set light, [ 0.0, 0.0, -1.0 ]
If you want to shine light directly from above I would give
set light, [ 0.0, -1.0, 0.0 ]
a shot. i.e. with a vector from [0,0,0] to [ 0.0, -1.0, 0.0 ], but that is
just a guess. I have not seen any documentation on h
Eugen Leitl writes:
> It seems to be in everyone's interest to allow easy interoperation
> between the toolkits. However, in my experience it is a frustrating and
> difficult task, even for relatively simple tasks.
True.
> I believe that a common set of core modules is required. The most
Not
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