Hi,
I have a virus envelope protein structure pdb entry,
and I want to rebuild the whole virus protein shell
using the symmetry transformations given in the 180 (60 trimers)
REMARK 350 BIOMT1 1 1.0 0.0 0.0
REMARK 350 BIOMT2 1 0.0 1.0 0.0
REMARK 350 BIOMT3 1
Ok, biological unit, thats great!
but now,
how do I save this virus capsid as a a pdb or mol file
where each of the many subunits have a different chain identifier.
When I save the virus caspid structure with all subunits visible, the
pdb file still only has on subunit in it, not all of
Hello,
I am also interested in being able to display an entire virus capsid.
Ny new question regards Todd's reply to check Movie-Show All States.
I run Native PyMOL for MacOSX on a G5, and I have never been able to
access the preferences for PyMOL, the option is greyed out on the file
menu.
Command line equivalent is the following:
set all_states,1
On Fri, 2004-04-02 at 11:38, Ann Mullin wrote:
Hello,
I am also interested in being able to display an entire virus capsid.
Ny new question regards Todd's reply to check Movie-Show All States.
I run Native PyMOL for MacOSX on
Dear Pymol users,
I am a new pymol explorer (not a user yet :-) and it seems to me that I am
not able to select multiple atoms by using the atom number (or id, as
pymol call it) in the PDB file. For example, if I would like to
select 100 atoms (of consecutive atom numbers) in a polymerase, how
Lihua,
You're correct: 'id' doesn't currently have the capability of selecting by
range or even using a list. However, we can probably add that behavior in a
future version.
In the meantime, you could tap Python for the task, but it will be slow:
select myrange, none
for a in
