[PyMOL] select all aminoacids and not ligand

Hi all is there any shortcut to select all aminoacid in a complex and not the ligand? something like select my, all and not "ligand" where I don't know the resn of the ligand but in my script I should be able to discern between aminoacids (ALA,VAL, etc...) and not. thanks in advance Regards andre

Re: [PyMOL] select all aminoacids and not ligand

in case your ligand has a different chain id than your protein, you could use that to distinguish. On Tuesday 12 July 2005 11:59, Andrea Spitaleri wrote: > Hi all > is there any shortcut to select all aminoacid in a complex and not the > ligand? something like > select my, all and not "ligand" wh

Re: [PyMOL] select all aminoacids and not ligand

Hi, thanks. that was my first answer and it works. but in case the chain id are the same? and 2005/7/12, Marc Bruning : > in case your ligand has a different chain id than your protein, you could use > that to distinguish. > > On Tuesday 12 July 2005 11:59, Andrea Spitaleri wrote: > > Hi all > >

Re: [PyMOL] select all aminoacids and not ligand

you could look into the pdb file to find out what residue number your ligand has. but i guess most often proteins and ligands have different chain ids. On Tuesday 12 July 2005 12:25, Andrea Spitaleri wrote: > Hi, > thanks. that was my first answer and it works. > but in case the chain id are the

Re: [PyMOL] Linux NVidia segmentation fault

Have you tried 6629 driver? We also had some other problems with the newest driver, so we just switched back to 6629. On Tue, 12 Jul 2005, Paolo Tosco wrote: Hi everybody, I have read in the thread about the infamous "segmentation fault" issue concerning NVidia Linux drivers and PyMOL. Warren

R: Re: [PyMOL] Linux NVidia segmentation fault

Thank you very much for your answer. Indeed I started experiencing the segmentation fault with driver 6629, which is the one shipped with RHEL 3.0. That's why I decided to try newer drivers. Is your graphic board a Nvidia Quadro FX? Maybe this issue doesn't come up with any Nvidia board, but on

Re: R: Re: [PyMOL] Linux NVidia segmentation fault

No, we don't have Quadro FX, we have 3DForce FX 5600-256. When we use the new drivers, it just sometime freeze the computers, not patically a Pymol related problem. Sorry couldn't help more, good luck. Chen On Tue, 12 Jul 2005, Paolo Tosco wrote: Thank you very much for your answer. Indeed

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Dear Colleagues - Forgive the semi-spam, but this position will definitely involve PyMOL/python-scripting! The Structural Biology group at Exelixis in San Francisco is currently looking to hire an additional crystallographer, preferably someone with scripting and/or coding skills. Knowledge

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