Hi
For a few days I have been search for the open source version of PyMol for SGI,
in vain. Can somebody point me to right links
thanks and regards
S. Thiyagarajan
Centre of Excellence in Bioinformatics
School of Biotechnology
Madurai Kamaraj University
Madurai - 625021-
Hi
For a few days I have been searching for the open source version of PyMol for
SGI, in vain. Can somebody point me to right links. (sorry for the repetition,
just corrected a typo)
thanks and regards
S. Thiyagarajan
Centre of Excellence in Bioinformatics
School of Biotechnology
Madurai K
dear all,
i just wondered if there is really no way to execute the
clip-command for a single object. the online help and the
user guide only gives examples and advices for the hole
scene, seems i miss something really obvious... but i would
like to show a (whole) molecule but only parts of its
Sebastian,
individual clipping planes for objects has been a long standing request and I
am not sure how far it is the queue. Jason may have some more in-depth insight.
If you really want individual clipping planes for object you need to use PovRay
and play around with bounding boxes. That appr
Carsten,
This is something that is long overdue in PyMOL. While this hasn't
been on the top of my stack of things to do, I'll reconsider as I
think it'll be immediately useful.
The workaround in the meantime is to render different layers by
repositioning the clipping planes and compositing your
Greetings,
I'd like to pass on a few notes to let you know some of what's going
on in the world of PyMOL.
First, the PyMOL website has been completely changed. I wanted it to
be on par with the quality of images and movies one can make in PyMOL.
I also wanted to make sure it didn't look too sto
> First, the PyMOL website has been completely changed. I wanted it to
> be on par with the quality of images and movies one can make in PyMOL.
> I also wanted to make sure it didn't look too stodgy corporate-like.
> Anyhow, it's up and I like it alot, actually.
I see "USER-SPONSORED" and "OPEN-
heh, nm I found it :
Open-Source and Educational Users: Please consult & participate in the
PyMOL Community Wiki instead, which has tons of FREE usage
information. The Official PyMOL Downloads and Documentation site is
for PyMOL Sponsors only.
On Thu, Aug 19, 2010 at 2:48 PM, Sabuj Pattanayek wr
Could anyone comment on the demise of pymol
0.99 for download? or the education-only builds? I see if you dig
enough there is an educational-only version of Pymol that requires
registration. Do the downloaded educational-only executables
expire, and how does it d
Hi Jason,
> First, the PyMOL website has been completely changed. I wanted it to
> be on par with the quality of images and movies one can make in PyMOL.
> I also wanted to make sure it didn't look too stodgy corporate-like.
> Anyhow, it's up and I like it alot, actually.
Probably the most nast
Whooops! -- Don't clean coffee off your return key when editing an
email--some random combination of keys plus return, just fired off the
incomplete email. Continuing...
Second, JyMOL is out (http://pymol.org/jymol). JyMOL is free for
non-profit research. To get JyMOL you have to fill out some
Sabuj,
As you noticed, things are moved around. I tried to keep the
organization clean, instead of just throwing up tons of links. There
are still some other links and pages I need to add back.
Cheers,
-- Jason
On Thu, Aug 19, 2010 at 3:51 PM, Sabuj Pattanayek wrote:
> heh, nm I found it :
>
Tsjerk,
>> First, the PyMOL website has been completely changed. I wanted it to
>> be on par with the quality of images and movies one can make in PyMOL.
>> I also wanted to make sure it didn't look too stodgy corporate-like.
>> Anyhow, it's up and I like it alot, actually.
>
> Probably the mos
Hi All,
According to the newly upgraded PyMOL website, the correct method for citing
PyMOL is:
The PyMOL Molecular Graphics System, Version 1.3, Schrödinger, LLC.
However, I'm finding it difficult to choose a category in Endnote so that the
format comes out as shown above. I know that this
Hi Roger,
I moved the 0.99 build download page because I didn't have a good
place for it during the reorganization. I'll add them back when I
update the Download page.
Nothing has changed with the free educational builds, just the
location of the link (as with 90% of the site). Don't worry, we
Sean,
Great idea! I'll try to make Endnote and BibTex entries for PyMOL,
JyMOL and AxPyMOL.
Cheers,
-- Jason
On Thu, Aug 19, 2010 at 4:51 PM, Sean Law wrote:
> Hi All,
>
> According to the newly upgraded PyMOL website, the correct method for citing
> PyMOL is:
>
> The PyMOL Molecular Graphics
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