Hi,
I have a bunch of mol2 files that I'm trying to load all at once in pymol.
I know you can do that in linux by launching pymol with
>pymol *.mol2
but I'm in windows, so I tried adding pymol's address to my PATH
environmental variable but that didn't allow me to launch pymol in t
Hi,
> I tried writing a macro where I woul use load *.mol2 but that doesn't
> work either.
You can use glob in Python. An example is in the
"User Comments/Examples" section of
http://www.pymolwiki.org/index.php/Load .
Best regards,
Takanori Nakane
On 2014-09-10 08:56, ashika torikora wrote:
>
Hello Amita,
On Wed, 2014-09-10 09:41 EDT, Amita Rani Sahoo
wrote:
> Dear Pymol users,
>
> I want to calculate backbone RMSD of proteins having two different
> conformations (For example 2RH1 and 1F88). With the align command it
> calculates the executive RMSD, but i need backbone RMSD. Pleas
Hi,
Try the following in PyMOL's command prompt.
from glob import glob
for file in glob("path/to/data/*.mol2"): cmd.load(file)
Takanori Nakane
On 2014-09-10 11:10, ashika torikora wrote:
> I don't think I understand what glob does or how to use it.
>
> 2014-09-10 10:59 GMT+02:00 T. Nakane :
>
Try this:
PyMOL>super PDBfile1CA, PDBfile2CA
PyMOL>Save PDBfile1.pdb, PDBfile1
PyMOL>Save PDBfile2.pdb, PDBfile2
Explanation:
The first line aligns the alpha carbons of the two files.I assume you
have loaded the two files in advance. The RMSD will appear on the screen
as output.The
