Hi Jordan,
A quick look shows that there is no bond between the adjacent
phosphotyrosines. Apparently they are too far apart for Pymol's bond check.
Cheers,
Tsjerk
On Tue, Dec 23, 2014 at 6:20 AM, Jordan Willis jwillis0...@gmail.com
wrote:
Does anyone know why PyMoL renders the PDBs 3U2S and
my experience shows that when you have two HETATM residues one after another,
pymol never shows this bond because the crystallographer never put a CONECT
record for it, which pymol wants.
eg for 1674, there is not CONECT showing 1676 as being bonded and since they
are HETATM , pymol decides to
This unusual file has all the backbone bonds indicated with CONECT records
-- except the missing links you note. I'm guessing that PyMOL is respecting
that, and that it could be an RCSB file error.
CONECT 9606 9593
9607
CONECT 9607
9606
CONECT 9608
9609
...
CONECT 1674 1661
1675
CONECT 1675
1674
actually -- I see there are just CONECT records for all the HETATMs, as
usual. Nothing odd about that. But, nonetheless, in this case those CONECT
records are not there. The point is that it has nothing to do with PyMOL.
