Hello Pymolers,
When trying to build a polypeptide chain with the Build Residue command,
I find no "trans" conformation for the phi and psi angles, only Helix
and Beta sheet. Is there a simple way of building a chain in the trans
(extended) conformation ?
Thanks in advance.
--
R. Charbel MAR
Albert,
looks like it is from 'cutemol'. You can probably achieve a similar effect in
Pymol
-enable perspective
-play around with occlusion (search in settings for occlusion)
-display protein with 'cartoon loop'
-show sidechains for selected residues
-fog seems to have a tint of grey in there, y
Hi Charbel,
After you opened the builder panel, you can change the "secondary_structure"
setting to 4 before you start building:
PyMOL> set secondary_structure, 4
You may also like the "fab" command to build peptides:
http://pymolwiki.org/index.php/Fab
Extended poly-ALA example:
PyMOL> fab A
what’s the reference to the paper?
> On Feb 12, 2016, at 1:39 AM, Albert wrote:
>
>
>
> Hello
>
> I found a very nice figure in an article but the author didn't mention
> which software he used for render. I am just wondering is it possible to
> render in the same way in Pymol? I've attached
