Re: [PyMOL] alternative method for loading coordinates

2003-09-10 Thread Tina Li
Warren, That's exactly what I need for cutting down on the number of unnecessary files! Thank you! (...wondering how many hidden goodies are out there...) Tina =) - Original Message - From: "Warren L. DeLano" To: "'Tina Li'" ; Sent: Tuesday, September 09, 2003 8:42 PM Subject: RE: [

[PyMOL] pymol raytracing crash

2003-09-10 Thread Thomas Siegmund
Hi everybody, I am new to pymol. So maybe I'm doing something wrong, but pymol almost everytime crashes when I try to raytrace a picture. I had some success with small protein structures in cartoon representation. The same molecule in lines or sticks representation crashes the pymol raytracer.

Re: [PyMOL] Re: PyMOL-users digest, Vol 1 #408 - 11 msgs

2003-09-10 Thread alan
Hi Dan! Thank you too... for decriphering what I tried to say. > > But pymol rpm for RH is *NOT* a friend of MDK, I suggest you use > > pymol-0_90-bin-linux-libc6-i386.tgz Pymol is quite awesome by itself, but running with proper hardware... Cheers, Alan Quoting Daniel Rigden : > Hi Alan > >

Re: [PyMOL] Re: PyMOL-users digest, Vol 1 #408 - 11 msgs

2003-09-10 Thread Daniel Rigden
Hi Alan Thanks for the tip! Taking the tar route rather than the rpm one makes installation trivial on Mandrake 9.1. I'm even more impressed to see that PYMOL automatically detects both processors so rendering is just phenomenally fast. Cheers Dan On Tue, 2003-09-09 at 20:48, a...@lac.inpe.br

Re: [PyMOL] pymol problems with Mandrake 9.1

2003-09-10 Thread Michael Banck
On Tue, Sep 09, 2003 at 06:40:37AM -0700, Warren L. DeLano wrote: > RPM doesn't look at the file system (AFAIK), it looks in the RPM > database for the names of (Redhat-specific) known dependency packages. AFAIK, rpms can also declare file-dependencies. Whether this is a good thing or not, I

[PyMOL] energy minimisation in python

2003-09-10 Thread Dr. Daniel James White PhD
Warren , Are you aware of the python MMTK molecular dynamics package? AMBER force field and energy minimisation are there! Could this be easily interfaced with pymol? http://starship.python.net/crew/hinsen/MMTK/ I had a play with it but I don't really know what I am doing and need to learn