Re: [PyMOL] Trying to plug APBS into PyMOL for electrostatics (almost working)

2003-12-17 Thread Michael George Lerner
> > What's the problem? Both PyMOL and APBS are licensed under the GPL so I > > see no problems there. > > Well, pymol isn't obviously. Note to self: Don't post about licensing > stuff after an evening of mulled wine. I've had an evening of nice port .. we'll see how a port-influenced evening comp

Re: [PyMOL] Trying to plug APBS into PyMOL for electrostatics (almost working)

2003-12-17 Thread Michael Banck
On Thu, Dec 18, 2003 at 12:26:48AM +0100, Michael Banck wrote: > On Wed, Dec 17, 2003 at 06:00:44PM -0500, Michael George Lerner wrote: > > I've gotten the code much closer to working. Also, I think it's factored > > well enough that most of it should be non-GPL-contaminated. After I > > actually

Re: [PyMOL] Trying to plug APBS into PyMOL for electrostatics (almost working)

2003-12-17 Thread Michael Banck
On Wed, Dec 17, 2003 at 06:00:44PM -0500, Michael George Lerner wrote: > I've gotten the code much closer to working. Also, I think it's factored > well enough that most of it should be non-GPL-contaminated. After I > actually get it working completely, I'll email the APBS folks to see if > they

RE: [PyMOL] Trying to plug APBS into PyMOL for electrostatics (almost working)

2003-12-17 Thread Michael George Lerner
Hi again, I've gotten the code much closer to working. Also, I think it's factored well enough that most of it should be non-GPL-contaminated. After I actually get it working completely, I'll email the APBS folks to see if they care about licensing issues. Right now, I can generate isomeshes an

Re: [PyMOL] assign secondary structure?

2003-12-17 Thread Robert Campbell
* Michael Bovee [2003-12-16 14:27] wrote: > Hmm. When I try this I get a syntax error: > __ > PyMOL>load EcHRSade.pdb > Executive: object "EcHRSade" created. > PyMOL>hide > PyMOL>show cartoon > PyMOL>dss EcHRSade > Traceback (most recent call last)

Re: [PyMOL] adjust surface?

2003-12-17 Thread Paulo Martel
On Wed, 2003-12-17 at 17:39, Scott Classen wrote: > Hi Ann, > you can set the radius of the "water" probe used to construct the > surface by setting solvent_radius to something smaller than 1.4. You > can either look in the pulldown menus for the settings panel to adjust > the value in a GUI or

Re: [PyMOL] adjust surface?

2003-12-17 Thread Scott Classen
Hi Ann, you can set the radius of the "water" probe used to construct the surface by setting solvent_radius to something smaller than 1.4. You can either look in the pulldown menus for the settings panel to adjust the value in a GUI or type: set solvent_radius, 1.2in the text window.