version 0.98 (beta 07 and beta 17) loads PDB IS 1DT7 just fine. It's a little
slow, but it works! Are you sure you don't have "auto-zoom" off? I turn
auto-zoom off by default and as a result some entries (like 1DT7) load but are
not visible. Clicking the "zoom" button brings it into the cent
Sphere transparency example included below...
ALPHA must preceed COLOR to be effective.
PyMOL does not yet do a global sort of tranparent triangles, so there will
be artifacts in OpenGL. Raytracing should look fine however.
# from within a .py OR .pym file...
from pymol.cgo import *
from pymol
Windows & Mac Users,
I've made a fundamental change to PyMOL's mouse interface, and would like to
hear what you think.
A while back, one of our insightful Merck colleagues made what I though was
an excellent point: "A mouse-click is not the same thing as a
mouse-click-and-drag." Thus, it occurr
On Wed, 17 Nov 2004 10:48:49 -0800 (PST), Thomas Stout
wrote:
Hi All --
Recently I've noticed a growing number of questions
being posed to the PyMOL mailing list that never seem
to get responses. I infer from this that one or both
of two things are happening: either 1) list members
that kn
I use something like:
color blue, resi 10-20 and chain R
On Fri, 2004-11-19 at 09:57 -0500, A. Thomas Torello wrote:
> Hi there,
> Sorry to post such a basic question, I'm new to PyMol and am having
> trouble mastering some of the basics.
>
> Suppose I have a pdb file with multiple chains, and
Hi there,
Sorry to post such a basic question, I'm new to PyMol and am having
trouble mastering some of the basics.
Suppose I have a pdb file with multiple chains, and want to select a
subset of residues from only 1 of those chains.
I've tried different commands but cannot seem to keep the sub
pymol-0.97 cmd.read_pdbstr is dieing for remotely large pdb files. One
for example is 1DT7. I don't get a descriptive error:
/usr/local/bin/pymol: line 2: 10486 Segmentation fault
/usr/bin/python /usr/local/lib/python2.3/site-packages/pymol/__init__.py
$*
Thanks,
Charlie
