[PyMOL] Surface Edge

2006-09-20 Thread Paul Wilhelm Elsinghorst
Hi, please have a look at this image: http://pwe.no-ip.org/other/1.png I'm having trouble with the edge of a surface selection. It seems that there is always some more surface shown than the selected part. What I did is, that I selected the red part to show the surface in obj1 and to hide the

Re: [PyMOL] Surface Edge

2006-09-20 Thread Robert Immormino
Paul, I think the reason the surface coloring spills over is because there are some surface triangles that are shared by the selection you want (red) and the neighboring residues (grey)... So it should work if you only use one selection, by saying something like: load my_protein.pdb, show

Re: [PyMOL] Surface Edge

2006-09-20 Thread Matthew . Franklin
pymol-users-boun...@lists.sourceforge.net wrote on 09/20/2006 07:28:00 AM: Paul, I think the reason the surface coloring spills over is because there are some surface triangles that are shared by the selection you want (red) and the neighboring residues (grey)... So it should work if you

Re: [PyMOL] Surface Edge

2006-09-20 Thread Jason T Maynes
I believe that you need to make these new objects to correct the problem, at least this is a quick fix that I have done in the past. There may be a more elegant solution: load my.pdb, obj1 load my.pdb, obj2 [whatever to each obj] When loaded separately you don't have this problem. Cheers, JTM

[PyMOL] drawing missing region

2006-09-20 Thread Rinku Jain
Hi, I am trying to make a cartoon representation of a protein structure that has a missing loop. I would like to show the missing region as a curved dashed line. Can this be done in pymol? Thanks Rinku __ Do You Yahoo!? Tired of spam? Yahoo!