[PyMOL] How can I stop PyMOL sleeping when idle?

I am trying to use a glut timer to run a personalized chunk of code compiled with PyMOL (v0.99). My code modifies the PyMOL global object. When my glut timer is set to fire often (for example 100 times/sec) , it only fires 5 times/sec while PyMOL is idle. When a glut event is raised (such as a

[PyMOL] Per residue rms

Dear people Is there somewhere in pymol an option that will allow me to see the per-residue rms-values when doing a structural alignment with align? Regards /Per Larsson

Re: [PyMOL] How do I handle pmw virtual package for pymol 1.0 on Mac OS 10.4.10?

If this indeed is the case (i.e., if you are using the 10.3 or 10.4-transitional branch of fink), I recommend you do the following: 1. sudo rm -fR /sw 2. Download and install the latest Xcode, X11.app, and be sure the X11 SDK with the latest Xcode gets installed (it should by default). 3. Get th

Re: [PyMOL] How do I handle pmw virtual package for pymol 1.0 on Mac OS 10.4.10?

Lorraine, Have you upgraded a fink 10.3 installation to 10.4? My experience is that this process has a lot of rough edges and that you are far better off to move aside your /sw directory and reinstall the current fink in that case. Jack - Original Message - From: Willia

[PyMOL] hardware stereo winXP

Dear people, Have just finished an install of winXP (32) on an AMD-X2, 4GB RAM, Nvidia Quadro4-980XGL-AGP. Found the driver for this graphic card and the monitor is an 21" CRT EIZO Flexscan T966. Now running 1280x...@120hz with fH 122.8 and fV 119.4. Pymol runs great...but it will not start th

[PyMOL] blue line stereo on a MacBook

Hi, I'm trying to get blue line stereo on my MacBook pro (OS X.4.10 Radeon X1600) It is connected to a 21" SGI CRT monitor (1024x...@120hz). I launched pymol 0.99rc6 using /Applications/PyMOLX11Hybrid.app/Contents/MacOS/MacPyMOL -B -X -1000 to force Blue line stereo and opening of PyMol on t

Re: [PyMOL] dash_color

Hi, There's not actually a way to get the default back. Distances are stored as objects, so you can just use "color". Best, Tsjerk On 9/19/07, Lari Lehtio wrote: > I do not know how to set the default, so I just use > > >color grey50, dist* > > ~L~ > > ___

Re: [PyMOL] How do I handle pmw virtual package for pymol 1.0 on Mac OS 10.4.10?

Hi Lorraine: All of the python packages in fink have suffixes that correspond to version numbers, so if you wanted to use pymol with the most current python, you should issue fink selfupdate; fink update-all; fink install pymol-py25 I would have thought that would automatically ensure you ha

Re: [PyMOL] dash_color

I do not know how to set the default, so I just use >color grey50, dist* ~L~ ___ Lari Lehtiö Structural Genomics Consortium Medical Biochemistry & Biophysics Dept. Karolinska Institute Stockholm, Sweden ___

[PyMOL] dash_color

Hi, Is there a way to set the colour of the dashed line that is produced by the distance command in pymol? There doesn't seem to be an obvious attribute like dash_color that can be set. Cheers Bryn == R. Bryn Fenw

Re: [PyMOL] getting lists of resn, resi, and atom ID of a selection.

Dear Robert, Thank you very much for your kind help. I also tried "cmd.iterate()", and found it works well; stored.resi = [] cmd.iterate("selection", "stored.resi.append(resi)") Sincerely, Tomoko - Easy + Joy + Powerfu