Quyen,
If clipping isn't the effect you want, the solution probably lies in
increasing the camera field of view angle which will enable PyMOL to better
get of inside spaces without having nearby elements appear to intersect
the camera surface (or front clipping plane).
set field_of_view, 45
Ah thank you Warren, that gave it a fish-eye effect that seems to work. Is
there any other way to go about this problem? Is there no way to move the
camera from looking in to looking out? By default, the camera is anchored
outside the molecule, can the camera be anchored to a point inside the
Ah ha, now I see what you're angling at! What a great question -- I'm
amazed this hasn't come up before in ten years of usage and development.
The core problem is that PyMOL's camera has been designed from day one to
orbit around a specific point in space, not at a point. To get the effect
you
QT,
No, unfortunately, it is more complicated than that...see the community
wiki:
http://pymolwiki.org/index.php/Get_View
Also, for sectioning, you may wish to disable depth_cue
unset depth_cue
Cheers,
Warren
--
DeLano Scientific LLC
Subscriber Support Services
mailto:supp...@delsci.com
Hi again everyone --
I have another odd PyMOL question: does anyone know if it is possible to
make selections based on what color certain atoms are? I need to do
some wholesale re-coloring of a series of complicated figures and it
would be extremely useful if I could just say something like:
Thomas Stout tst...@exelixis.com wrote on 11/11/2008 04:46:38 PM:
Hi again everyone --
I have another odd PyMOL question: does anyone know if it is
possible to make selections based on what color certain atoms are?
I need to do some wholesale re-coloring of a series of complicated
So, a follow up question becomes: is there a way to report what color
something is?
:)
-Tom
-Original Message-
From: matthew.frank...@imclone.com [mailto:matthew.frank...@imclone.com]
Sent: Tuesday, November 11, 2008 1:52 PM
To: Thomas Stout
Cc: pymol-users@lists.sourceforge.net
