Re: [PyMOL] Procedure for adding packages to pymol site-packages?

2009-03-07 Thread Pete Meyer
how would I go about adding a package to the $PYMOL_PATH/ext/.../site-packages w/o screwing up the install? For most packages the mechanism is python setup.py install. Would this work to run this from within pymol? With my usual way of installing pymol is to build most of the dependencies

Re: [PyMOL] Procedure for adding packages to pymol site-packages?

2009-03-07 Thread Warren DeLano
Pete, Yes, this approach will work if you build from the open-source code, and indeed, that is the recommended approach if you need to link PyMOL to libraries with native code. The problem comes in when users wish to build native code and link them against precompiled PyMOL executables. That

Re: [PyMOL] model refuses to display surface and mesh

2009-03-07 Thread Warren DeLano
Add: cmd.set(surface_mode,1) cmd.set(mesh_mode,1) -Original Message- From: petr benes [mailto:xbe...@centrum.cz] Sent: Friday, March 06, 2009 7:21 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] model refuses to display surface and mesh Dear pyMol users,  I am trying

Re: [PyMOL] Save sticks as .obj

2009-03-07 Thread Warren DeLano
David, Currently, .obj only contains triangle-based representations (surfaces cartoons). Try using .wrl (VRML2) or .pov (Povray) instead -- both formats include a cylinder primitive. Cheers, Warren -Original Message- From: David Borland [mailto:borl...@renci.org] Sent: Friday,