[PyMOL] Grid View of a Group

2009-09-17 Thread T. Andrew Binkowski
Hi, I noticed that in the Grid view that a group of objects is in each view. For example: Group A has protein1, protein2 and protein 3. Group B has protein 4 and protein 5. In the grid view there are two views:Group A and GroupB. Is it possible to have the grid view have 5 views, one

Re: [PyMOL] Grid View of a Group

2009-09-17 Thread Andreas Förster
Hey Andrew, as far as I know, each visible object gets a spot on the grid. If you want to show two proteins that are part of one object in different positions on the grid, you have to split the object first (create individual objects) and then hide the original. Andreas T. Andrew

[PyMOL] 2. pymol autodock plugin (Daniel Seeliger)

2009-09-17 Thread Kin Sing Stephen Lee
I have the same problem on loading autodock plugin while i'm using macpymol 1.1 I have installed both numpy and python Could you please help me with that? Thank you very much sing On Sep 17, 2009, at 12:15 PM, pymol-users- requ...@lists.sourceforge.net wrote: Send PyMOL-users mailing

[PyMOL] Displaying electron density from maps output by Coot.

2009-09-17 Thread Andy Torelli
Hi everyone, I have a simple problem that has come up before (4/2/2009 post), but I haven't found a solution yet. Maps written out from Coot and display in Pymol seem to be situated on a different origin compared to the PDB coordinates. E.g., if I: load my-structure.pdb load

Re: [PyMOL] Displaying electron density from maps output by Coot.

2009-09-17 Thread Warren DeLano
To Everyone: When posting such questions, please always indicate what specific vesion of PyMOL you are using, since the program continues to evolve with every release (to reflect numerous end-user suggestions, as enabled by contributions from our sponsors.) To Andy: PyMOL version 1.2r1 should

[PyMOL] Pymol Symmetry Mates Naming

2009-09-17 Thread fangsheng
Hi,all, I am encountering a problem with symmetry mates generated by pymol. It seems that the naming system in pymol and ccp4-supported ACT program are not consistent. I have tested several pdbs in P4212 space group and attempted to figure out the relationship between these two, but failed. I

Re: [PyMOL] Pymol Symmetry Mates Naming

2009-09-17 Thread Warren DeLano
Fang, There is no relationship between ACT and PyMOL, so one wouldn't necessarily expect them to match in terms of how they name the resulting objects. However, I suspect there may also be a difference of intent: Based on a quick glance at PyMOL source code, PyMOL appears to convey a