Dear Jason,
I know there are many residue naming of RNA/DNA depending on what
software is used.
(for example, Adenine: ADE, A, Ar, Ad,... )
I hope PyMOL would support any naming!
Thanks,
Keitaro
2010/12/11 Jason Vertrees :
> Hi Keitaro,
>
> Code has been started for "nucseq" and the shorthand
What does this .pml script do? I once had artefacts on the interface
after loading an incomplete CGO object.
Cheers,
Thomas
Bradley Hintze wrote, On 12/10/10 18:26:
> Hi Jason,
>
> I'm using Snow Leopard. It only happens when i run my .pml script. If I
> put 'load .pdb' at the end of th
Hi Jason,
I'm using Snow Leopard. It only happens when i run my .pml script. If I put
'load .pdb' at the end of the script the panel stays but if I turn on
and off the objects created in my script the panel disappears. It appears my
system is up to date. I'm not sure what the deal is.
Bradle
Hi Bradley,
This sounds like a mobile video card problem. Are you on a laptop?
Perhaps one with an Intel GM45 card? What OS?
Cheers,
-- Jason
On Thu, Dec 9, 2010 at 11:13 AM, Bradley Hintze
wrote:
> Hi,
>
> I'm using pymol 1.3 and I have a pml script. when I do a show as command the
> right-
Hi Keitaro,
Code has been started for "nucseq" and the shorthand "ns.". I think
it was not completed because at first glance it appears less than
straightforward: "ps." searches for the one-letter residue names, but
"ns." would have to map one-letter codes to those commonly used in the
data, "DA"
Hello Imtiaz,
On Fri, 10 Dec 2010 08:41:14 + imtiaz wrote:
> I want to create a Pseudoatom in the center of a benzene ring for a ligand.
>
> I can easily create a Pseudoatom in the center of aromatic ring of
> amino acids in a protein by following the instructions give at
>
> http://www.py
I want to create a Pseudoatom in the center of a benzene ring for a ligand.
I can easily create a Pseudoatom in the center of aromatic ring of
amino acids in a protein by following the instructions give at
http://www.pymolwiki.org/index.php/Pseudoatom
i.e
load $TUT/1hpv.pdb
pseudoatom pi_cent,b/
