[PyMOL] Mouse no react sometimes

2011-05-02 Thread lina
Hi, Sometimes after I used command such as select something then I put my mouse back try to rotate, or zoom. at that time, the mouse just not work. sometimes I need to input 'edit' to make mouse can zoom. I don't know which cause the mouse here not work. Can anybody tell me how to avoid it or

Re: [PyMOL] pymol autodock plugins

2011-05-02 Thread Donnie Berkholz
On 21:37 Thu 28 Apr , lina wrote: Error: 1 type 'exceptions.IndexError' Exception in Tk callback Function: bound method Autodock.generate_receptor of pmg_tk.startup.autodock.Autodock instance at 0x2c31758 (type: type 'instancemethod') Args: () Traceback (innermost last): File

Re: [PyMOL] How to script preset actions

2011-05-02 Thread Jason Vertrees
Hi Maia, Just use 'preset.function_name((sele))'. For example: # fetch a protein, 1foo fetch 1foo, async=0 # call b-factor-putty on 1foo preset.b_factor_putty((1foo)) Cheers, -- Jason On Mon, May 2, 2011 at 4:46 PM, Maia Cherney mcher...@shaw.ca wrote: Dear Pymolers, I would like to

[PyMOL] PyMOL v1.4.1 Released

2011-05-02 Thread Jason Vertrees
Greetings PyMOLers, I'm happy to announce that we've released PyMOL v1.4.1, an update that improves stability and performance, and adds the new features listed below. Users who financially support the project by purchasing Incentive PyMOL may download it directly from http://pymol.org/dsc, and

[PyMOL] Virtual machines and graphics cards

2011-05-02 Thread Joel Tyndall
Hi folks, I am looking at running virtual linux on a windows XP machine and I noticed that pymol runs but without graphics acceleration. Its all installed on the windows side and I have searched the web to see if I can activate enhanced graphics on a linux guest. I don't think you can do it

Re: [PyMOL] Virtual machines and graphics cards

2011-05-02 Thread Jason Vertrees
Hi Joel, I am looking at running virtual linux on a windows XP machine and I noticed that pymol runs but without graphics acceleration. Its all installed on the windows side and I have searched the web to see if I can activate enhanced graphics on a linux guest. I don’t think you can do it

Re: [PyMOL] Virtual machines and graphics cards

2011-05-02 Thread Ben Eisenbraun
Hi Jason and Joel, As I understand it only Parallels at this time offers OpenGL support in the Linux VM. (But, Parallels doesn't yet support OpenGL in Ubuntu 11.04 with Unity, it's planned for their next update.) Both Parallels and VMWare offer OpenGL for Windows. VirtualBox has some