Try this.
import subprocess
# propkaprocess
# shell=False controls that the process remains in the same thread.
propkap = Popen(['propka'],
stdin=open('1pdb.pdb', 'r')
stdout=subprocess.PIPE
stderr=subprocess.PIPE
shell=False)
pr
Dear Suda,
cealign can be used to do structure based superposition
PyMOL> cealign target, mobile
However, it's a pair-wise based alignment. You have to align two
structures each time.
Hope this helps.
Zhijian Xu
Suda Ravindran wrote:
> Hi,
>
> I would like to know how to do structure based super
Hi Suda and Tsjerk,
there is "alignto" which used cealign. There is also in the menu "Action
> align > all to this" which uses cmd.util.mass_align (and that uses
cmd.align).
On Robert Campbell's site there is the "align_all.py" script:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/
On
