Thomas, thanks this works perfect.
Jason, I've tested this script on my system ( this is the membrane
protein inserted in the bilayer surrounded by two water layers ( up and
down ). During simulation individual water mollecules move into the protein
interiour ( in that case protein like a water
Hi Shane,
I've been playing with a virus 60mer on an intel core i7 workstation with
6Gb memory with good response. Just make sure you use the latest incentive
or open source version and have a good graphics card.
Cheers,
Tsjerk
On Jun 14, 2012 11:49 PM, "Shane Neeley" wrote:
Hi,
Does anyone
Hi Sean,
the usage message is generated by introspection, so with your implicit
arguments declaration it's not possible to get an informative usage
message. But you can add a docstring which will be displayed with "help
test" instead of "test ?".
def test(*args, **kwargs):
'''
DESCRIPTION
Hi,
Does anyone use pymol for very large structures, such as a full virus
60-mer capsid? If so, what processing power, memory, graphics card, etc. do
you need to render these large files and manipulate them without any
slowing? PyMol takes about 1 minute to think after trying to spin one of
these
> 2) Is anyone out there succesfully running a 3D projektor using the DLP
> Link option (white flash in between images to sync the glasses). Is this
> technique being used at all (for true stereoscopic 3D software such as
> Pymol, Coot, Yasara, etc.) by anyone?
Yes, we have theInfocus IN3116 which
Hi,
I am planing to purchase a LOW-COST "3D Protein Cave" consisting of a 3D
capable projector (720p @ 120Hz or DLP 3D Ready?) and a windows 7
computer with a quadro 2000 card. However, I am a bit sceptic about the
sync problem which leads to ghosting.
main Questions:
1) Is anyone out there s
Hi fellow PyMOLers,
Thought some of you may be interested in this:
http://pymolwiki.org/index.php/GLSL_Shaders
Test, improve, share ... :-)
Cheers!!
-- Shiven
--
Live Security Virtual Conference
Exclusive live eve
Hi Sean,
The pymol syntax for getting help on a command is "help command". I
think it is a wrapper around the python help function, for which the
syntax is "help(command)". In your case, it would only show something
like:
test(*args,**kwargs)
You can write a docstring, e.g. similar to the ones i
Hi PyMOL Community,
I have a PyMOL script that I have written that starts with the following kind
of format:
-from pymol import cmdfrom re import *
def test (*args, **kwargs):
var1=0 sel=""
for key in kwargs:if (key == "var1"): var1=int(kwargs["var1"])
elif (key
