Re: [PyMOL] morphing 3-states

2012-11-25 Thread Thomas Holder
Hi Jordan, morpheasy creates 30 states, which are mapped to 80 frames (forward play, pause, backward play). If you have multiple conformations, do morphs for each transition and join the results with create. Consider this example which morphs 1 - 2 - 3 - 1 # align conformations align conf2,

[PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
I was trying to figure out what to eat today so naturally I started looking for PDB libraries  with food components.  I was looking for garlic related chemicals when I came across this, http://molecules.gnu-darwin.org/ which seems to have many pdb files. My question I guess is, what does

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Thomas Holder
Hi Mike, you can fetch molecular files from any web address with the load command. Examples: File type recognized from file extension: PyMOL load http://molecules.gnu-darwin.org/html/00150001_00175000/153919/153919.pdb File type given with format argument: PyMOL load

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
Date: Sun, 25 Nov 2012 23:49:26 +0100 From: spel...@users.sourceforge.net To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries Hi Mike, you can fetch molecular files

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
fwiw, I did find mol2 format at this location which is just fine for my scripts, http://zinc.docking.org/substance/1633229 Thanks. From: marchy...@hotmail.com To: spel...@users.sourceforge.net; pymol-users@lists.sourceforge.net Date: Sun, 25 Nov