Re: [PyMOL] which code actually executes to load axplor file? Debugstatements not executing.

2013-01-03 Thread Thomas Holder
Hi Mike, I guess you are on Linux with Open-Source PyMOL, right? Can you send me the xplor file that causes PyMOL to segfault? From your backtrace it looks like the problem is related to crystal symmetry information. If you want to load some format which is not yet supported by PyMOL, the

Re: [PyMOL] which code actually executes to load axplor file? Debugstatements not executing.

2013-01-03 Thread Mike Marchywka
Thanks but it looks like I am ok now ( aside from orignally posting this on the wrong list LOL). My python build still hangs and has problems with the list area on right but the configure/make build process works fine and I could find the problem. Generally error checking is the last thing

[PyMOL] apbs2 plugin failure

2013-01-03 Thread Andreas Förster
Dear all, on our RHEL computers (6.2, 64-bit) with PyMOL compiled from CVS, the APBS2 plugin isn't functioning anymore. The plugin window opens just fine and the executables are found. When I select Use PDB2PQR in the Main tab, clicking on Set grid produces the following error: Error: 1

Re: [PyMOL] Atom renaming within selection

2013-01-03 Thread Jason Vertrees
James, alter my_sele, name=CA PyMOL might act quirky after doing that, though. Cheers, -- Jason On Thu, Jan 3, 2013 at 8:37 AM, James Starlight jmsstarli...@gmail.com wrote: Dear Pymol users! I want to rename all atoms within selection to the selected name. I've found that the