Michael,
I think you're right. We'll make and push the changes.
Cheers,
-- Jason
On Mon, Jan 20, 2014 at 10:40 AM, Michael Banck wrote:
> Hi,
>
> I noticed that the mutagenesis wizard uses PYMOL_PATH/data to locate the
> chempy sidechains, however, PYMOL_DATA would be more appropriate if the
Just wanted to say that your fix did solve my problem. Thanks again!
From: David Hall [li...@cowsandmilk.net]
Sent: Monday, January 20, 2014 8:34 AM
To: Lapolla, Suzanne M (HSC)
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Still need help with
Gefei,
Please read about labels (http://www.pymolwiki.org/index.php/Label; and
http://www.pymolwiki.org/index.php/Category:Labeling) and pseudoatoms (
http://www.pymolwiki.org/index.php/Pseudoatom). These should help you label
what you need to.
Cheers,
-- Jason
On Mon, Jan 20, 2014 at 9:57 AM,
Hi,
I noticed that the mutagenesis wizard uses PYMOL_PATH/data to locate the
chempy sidechains, however, PYMOL_DATA would be more appropriate if the
data is not installed alongside the pymol modules.
The attached patch fixes this.
Michael
--- ./modules/pymol/wizard/mutagenesis.py.orig 2014-01-2
Hi guys,
I am now preparing some proteins structure figures, and I think Pymol is a good
program. But now something happened to me, my protein just has 5 helices, and
I want to number and label the helices as H1, H2 …and H5 in the figure with
using Pymol directly (not photoshop), but I am sorr
Michael,
Nice catch—we'll fix it. Thanks for letting us know.
Cheers,
-- Jason
On Mon, Jan 20, 2014 at 9:11 AM, Michael Banck wrote:
> Hi,
>
> On Tue, Jan 14, 2014 at 05:11:51PM -0600, Jason Vertrees wrote:
> > We are happy to announce the release of PyMOL v1.7.0.0!
>
> Congrats!
>
> One thi
Thank you thank you! I will try that later today--I do appreciate the help. Did
I say thank you yet? Suzanne
From: David Hall [li...@cowsandmilk.net]
Sent: Monday, January 20, 2014 8:34 AM
To: Lapolla, Suzanne M (HSC)
Cc: pymol-users@lists.sourceforge.net
Subject:
Hi,
On Tue, Jan 14, 2014 at 05:11:51PM -0600, Jason Vertrees wrote:
> We are happy to announce the release of PyMOL v1.7.0.0!
Congrats!
One thing though: the open-source splash image has not been updated for
1.7 and still says "1.6.x".
Michael
I think there's a bug in python's code, not pymol's
In the file that it describes at the end ( C:\Python27\lib\mimetypes.py ) ,
you should change line 250 from:
except UnicodeEncodeError:
to
except (UnicodeEncodeError,UnicodeDecodeError):
keeping the indentation in the file and so on. Then the c
So, an update to my prev post/question--my computer husband was able to look at
the error msg I get when trying to "fetch" with pymol 1.7. He says the error is
with the python2.7 code, specifically in a library that handles unicode
characters--but according to the comment made in the code, this
I am posting this again as I have still not figured out why I am unable to
fetch or use the pdb plugin loader with pymol 1.7 I have cut/copied/pasted the
error msg I get below. I have tried uninstalling and reinstalling python 2.7.6
as well as python 1.7 (I have windows 64 bit --so I tried the 6
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