Re: [PyMOL] Pymol wrl output

2014-05-06 Thread Hurt, Darrell (NIH/NIAID) [E]
Hi everyone, We are developing a new NIH web portal for freely preparing 3D print files from molecular, microscopy, and medical imaging data. The website is in public beta, so you may see some changes in the final release, but this email thread seemed like a good opportunity to make you aware o

Re: [PyMOL] using a pseudoatom for distance measurement

2014-05-06 Thread Sampson, Jared
Hi Mary - If you already know which state has the conformation you want to use for your measurement, or if you want to create a pseudoatom for each state, you can do so by passing the `state` keyword to pseudoatom: set state, 1 # or 2, 3, etc. pseudoatom test, pdbfile_0001 and chain A and res

Re: [PyMOL] using a pseudoatom for distance measurement

2014-05-06 Thread M. Faridounnia
Thanks a lot for the tip and explaining the whole thing, Jared. I learned a lot from that. It worked but here is why I had a problem at the beginning (and tried the command I emailed), still same problem persists. I had tried similar command on one of the models after splitting the pdb file (split