[PyMOL] select state not working

2014-11-05 Thread Spencer Bliven
Hey, I've been doing a lot of work with PDB assemblies, which are distributed as multi-state structures. I would like to be able to align them based on individual chains from individual states. However, I haven't been able to figure out any way to uniquely identify atoms by state. The select

[PyMOL] Announcement: Molecular Graphics Software CueMol version 2.2

2014-11-05 Thread Ryuichiro Ishitani
Dear All, I'm sorry for off-topic posting. We are pleased to announce announce the molecular graphics program CueMol version 2.2. http://www.cuemol.org/en/ CueMol is an open-source computer program for the macromolecular structure visualization, especially for the sophisticated

Re: [PyMOL] select state not working

2014-11-05 Thread David Hall
I'm a little confused by what PDB assemblies you are talking about that are distributed as multi-state structures, but assuming they are similar to NMR models... you can use intra_fit ( http://www.pymolwiki.org/index.php/Intra_fit ) For example, with 2kgx, we start out with chain a in state 1 and