Hi,
On 4/4/16 6:04 PM, João M. Damas wrote:
> formula you present gives "twice" the BSA, depending of the definition
Agreed on all points, except that by my reading of the literature (since
the days of Chothia and colleagues, 1970s through this century), the
definition for BSA (or more
In theory, BSA is easy, if one is looking for just a general idea.
Otherwise, it may get complicated. The formula you present gives "twice"
the BSA, depending of the definition you are looking for. There are also
other ways to calculate the BSA. The BSA is also dependent on the probe
size.
João
Hello,
While there is no ready-to-use buried surface area (BSA) calculation
command, it is extremely easy to do it yourself. Just calculate the
accessible surface area (ASA) values (see the Get_Area command on how to do
that: http://www.pymolwiki.org/index.php/Get_Area) for the entire complex
and
Dear All,
Will you please tell me the command to calculate the contact surface area
between 2 sub-units in the protein complex? Will you please also tell me the
command to calculate the angle in degree between 2 domains in a sub-unit?
Smith
