https://pymolwiki.org/index.php/Modeling_and_Editing_Structures
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Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279 Campus Drive, Stanford CA 94305
Phone: (650) 723-6431
On Wed, Aug 1, 2018
Hi Kevin,
Yes I am talking about the the C-terminal Ser in the chain A of 2J3S. How
can I fix that ? I would like to do other work with this chain like
homology modeling, mutation influence on domian etc using Gromacs. but This
Ser in C-terminal has a missing so I cannot do anything about it.
Please be more specific with your questions. Which atoms? Which Ser? How
did you remove chain B, etc?
For some reason only the N is modeled for the C-terminal Ser in both chains
of 2J3S; if that's what you're talking about, then the issue is with the
deposited PDB file, and likely the atoms were
Hello,
I have a protein that i get from PDB https://www.rcsb.org/structure/2J3S
then I try to remove the chain B, and all water etc except the chain A.
it causes that I miss some atoms on the SER. Can you please advise how to
deal with it?
Thanks
Mohammad
