Re: [PyMOL] The 'select' command for complex residue selection

The last parentheses is not the ASCII character ")" (code 41), but the unicode character "）" (code U+FF09) and PyMOL can't handle that. https://www.compart.com/en/unicode/U+FF09 Cheers, Thomas > On Jul 9, 2019, at 5:47 AM, Kevin Jude wrote: > > Strange, I get the same error and can't figur

Re: [PyMOL] The 'select' command for complex residue selection

Hi, Ali, Your command format works well. Thank you. -- From:Ali Kusay Sent At:2019 Jul. 9 (Tue.) 11:11 To:孙业平 Cc:pymol-users Subject:Re: [PyMOL] The 'select' command for complex residue selection Hi Sunyeping, I am not sure where

Re: [PyMOL] The 'select' command for complex residue selection

Strange, I get the same error and can't figure out why it doesn't like the parentheses around the second term, though here are a few formulations that give the correct result without syntax errors: select sele, protein_A and chain A and (resi 29-33 or resi 70-73 or resi 116-119) or protein_A and

Re: [PyMOL] The 'select' command for complex residue selection

Hi Sunyeping, I am not sure where your error is coming from (I noticed you also wrote protein_A in second selection as well). I have however rewritten the command in a simpler way, so try this: select sele, (protein_A and c. A and resi 29-33+70-73+116-119) or (protein_B and c. C and resi 87-95

[PyMOL] The 'select' command for complex residue selection

Dear all, In pymol I loaded two protein: protein_A and protein_B. I want to make a selection of some incontinuous residues from two chains of protein_A, for example, residue 30-34, 71-74 and 117-120 from chain A and residue 88-96 from chain C. How should I write the select command? I tried the

[PyMOL] How to calculate RMSD among multiple proteins

Dear all, It is easy to evaluate the simularity of two proteins in pymol. We just need to align them and a RMSD will be given in pymol. However, I want to compare the strutural similiarity of multiple proteins. I can align two of them once and by doing alignment many times, I can finally get pa

Re: [PyMOL] How to label secondary structures in pymol

Thank you, Jared. -- From:Jared Sampson Sent At:2019 Jul. 8 (Mon.) 12:08 To:pymol-users ; 孙业平 Subject:Re: [PyMOL] How to label secondary structures in pymol Hi sunyeping - Yes, it is possible. You can pick one atom to label in

Re: [PyMOL] PyMOL-users Digest, Vol 158, Issue 6

Dear Yeping You can color the surface independent of the atom color with the command set surface_color, (color), (selection) similarly, you color the cartoon representation dependent of the atom color with the command set cartoon_color, (color), (selection) best regards Annemarie __