Re: [PyMOL] ModuleNotFoundError: No module named 'pymol._cmd'

Hi Markus, You mention two directories, maybe you're running PyMOL from the wrong one? /home/mheller/pymol-2.4/lib/python/pymol /usr/local/Pymol-2.4/lib/python/Pymol Cheers, Thomas > On Nov 28, 2019, at 1:00 AM, Markus Heller wrote: > > Hi, > > This is just an attempt to see if my issue

Re: [PyMOL] Autosave

It looks like strftime('%s') is not valid on Windows (it works fine for me on Linux and macOS). Here is an equivalent alternative that works on all platforms: filename = '~/pymol-auto-save-{}.pse'.format(int(time.time())) filename = os.path.expanduser(filename) Binding a key is also easy

Re: [PyMOL] Problem loading Amber trajectory

Hi Martin, Would it be possible to share those files with me? Thanks, Thomas > On Nov 28, 2019, at 6:00 PM, Rosellen, Martin > wrote: > > Dear all, > > I have issues loading Amber trajectories. First, I load the the topology > like this: > > load WT.prmtop, WT, 1, top > > output: > >

[PyMOL] Problem loading Amber trajectory

Dear all, I have issues loading Amber trajectories. First, I load the the topology like this: load WT.prmtop, WT, 1, top output:  ObjectMolecule: Attempting to read Amber7 topology file.  TOPStrToCoordSet: Warning: can't currently image a truncated octahedron... load_traj WT.trj, WT outp

[PyMOL] ModuleNotFoundError: No module named 'pymol._cmd'

Hi, This is just an attempt to see if my issue has popped up before. I have compiled open source Pymol 2.4, which I used for a few months now. Today, the following error prevents launching Pymol: $ pymol Traceback (most recent call last): File "/home/mheller/pymol-2.4/lib/python/pymol/__ini