[PyMOL] plug-ins on Mac OSX - X11?

is... Thanks in advance, Frieda /// Frieda Reichsman, PhD Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com ///

Re: [PyMOL] plug-ins on Mac OSX - X11?

of an alternate way of getting X11 onto an existing Mac? -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users- boun...@lists.sourceforge.net] On Behalf Of Frieda Reichsman Sent: Monday, March 05, 2007 5

[PyMOL] display MEP absolute color scale?

to tell the the scale (e.g., -5 to +5). All I need is the numbers... Thanks, Frieda /// Frieda Reichsman, PhD Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com ///

[PyMOL] succinct secondary structure 'readout'

? To dump it to the screen, try: iterate object name n. ca, print resn,resi,ss and it works, but the output is a long list of every residue. Is there a command to get the output more succinctly, such as 1-5 L 6-10 H 11-15 S Thanks, Frieda /// Frieda

Re: [PyMOL] succinct secondary structure 'readout'

On 10/9/07, Frieda Reichsman frie...@nsm.umass.edu wrote: Hi, I would like to get secondary structure information from a PyMOL file. I searched the list and found this: I need a list of the secondary structure assigned to each residue by dss in pymol. Is there a simple way to write

Re: [PyMOL] succinct secondary structure 'readout'

not know what command(s) to issue after I paste in the code. Thanks for your help, Frieda /// Frieda Reichsman Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com ///

Re: [PyMOL] succinct secondary structure 'readout'

/// Frieda Reichsman Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com /// - This SF.net email is sponsored

Re: [PyMOL] succinct secondary structure 'readout'

ssfilter( sslist ) Hope it helps (hope it works :S), Tsjerk On 10/9/07, Frieda Reichsman frie...@nsm.umass.edu wrote: Hi Tsjerk, Note the / in front of while, throws an error, I removed it and got a readout like the following, for each object in the file. [['MET', '1', 'S'], ['GLN', '2', 'S

Re: [PyMOL] succinct secondary structure 'readout'

@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users /// Frieda Reichsman Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com ///