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John Berrisford
PDBe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
suggestions on ensuring that there are some polygons in frame would
also be appreciated. Say, if there was a way to detect that cartoon would
fail so that I can switch to a lines or nonbonded representation (I wish
that was the default fallback for cartoon).
Thanks,
Spencer
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John Berrisford
PDBe
, what are the rgb codes that pymol uses, are they standard 0
to 1 (the same as molscript) or 0 to 255? Using some of the rgb codes from
molscript only seems to produce a grey background.
Thank you
John
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John Berrisford
Department of Molecular Biology and Biotechnology
University of Sheffield
in the script and
effectively ignore any previous sphere_scale command.
Am I doing something wrong and there is another, better way of doing this, for
example linking the size command to an object?
I have been so far unable to work out how to do this.
Thanks
John
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John Berrisford
Department
for me...
Cheers,
Warren
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
John Berrisford
Sent: Thursday, February 19, 2004 10:09 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL
I have searched the manual and forum and cannot find how to draw a hydrogen bond
between two specific atoms.
I wish to do the equivalent to the following molscript command
line position res-atom A97 OE1 to position res-atom M200 MN;
which draws a line between two atoms A97 OE1 and Mn200. So not
I wish to select multiple oxygens (labelled O1, O2 etc.. within my pdb file) and
colour them red for example. Is there any easy way of doing this other than
typing out a list of all the oxygens I wish to select?
eg. color red, (5paa and (name o1+o1a+o2+o3+o4+o5+o1p+o2p+o3p))
I know in molscript
