[PyMOL] Pymol sans display

2006-07-21 Thread Philippe . Garteiser-1
Hello list ! I need to work with a very large pdb file that stalls my pymol. Hence, I have tried to launch pymol with the -c switch, to no success. Under WindowsXP, pymol starts as usual, but disappears as soon as it is loaded. I tried also on a linux distribution (mepis). The console prints th

[PyMOL] problem: choking on big files

2006-07-27 Thread Philippe . Garteiser-1
Hi again, list. I need help on how to render an unconventional (non-protein) pdb file with a big number of atoms in it. Even with no display (console mode), pymol still crashes due to insufficient memory. A different hardware is out of the question and a smaller file would defeat my purpose, so

[PyMOL] how do i unset a cmd.set_key() binding ?

2007-02-09 Thread Philippe . Garteiser-1
Hi list ! I have a problem with set_key() that appeared when I executed two scripts sequentially. In both scripts I set the F1 key to do something different (ok, not a very smart move...). I thought that the newest set_key() would take precedence over the latest and overtake its adressing, but

Re: [PyMOL] how do i unset a cmd.set_key() binding ?

2007-02-13 Thread Philippe . Garteiser-1
Hello ! I finally found out what my problem was. Thanks to Warren DeLano I tried to overwrite a cmd.set_key with another one in a very simple setting, and it worked. That made me realize that what I wanted to do was to override a cmd.set_key()' with a scene selection rather than with another cm

[PyMOL] To mirek Cygler: color residue type

2007-04-10 Thread Philippe . Garteiser-1
I've updated the wiki with a script doing just that: resicolor.py. The script is available here: http://pymolwiki.org/index.php/Resicolor You can edit the coloring scheme to your liking from within the script. I haven't checked what the exact scheme was in sPDBv, it may be the same. Garteiser P

Re: [PyMOL] PyMOL-users Digest, Vol 11, Issue 5

2007-04-10 Thread Philippe . Garteiser-1
I've updated the wiki with a script doing just that: resicolor.py. The script is available here: http://pymolwiki.org/index.php/Resicolor You can edit the coloring scheme to your liking from within the script. I haven't checked what the exact scheme was in sPDBv, it may be the same. Garteiser P