[PyMOL] Postdoctoral position in macromolecular crystallography, HZI Braunschweig, Germany

of Proteins” headed by Prof. Wulf Blankenfeldt. The department focuses on unraveling molecular mechanisms of uncharacterized processes in the metabolism, regulation and virulence of pathogenic microorganisms. About the institute More than 800 people work at the HZI, a research institution

[PyMOL] Finding parameter settings in old PyMol session

Hi all, I need to make a set of figures with a protein having different ligands bound to the active site. I already have a few of them finished and now I want to make the rest in a similar (identical) way. Unfortunately, I have forgotten how I set sphere_scale, stick_radius and the like for

[PyMOL] Showing only part of a surface around a ligand

Hi all, this question may be resolvable by sufficient RTFMing, but maybe there is someone out there to help me... I am trying to generate a figure in which I want to show only a part of the protein surface around a ligand - pretty much like preset -- ligand sites -- solid surface I have

Re: [PyMOL] Displaying/defining double bonds in a ligand molecule; lighting problem

Warren, Mark; thanks for these suggestions concerning overexposed images. We have dumped Warren's settings into our pymolrc file and are now getting much better results... Best, Wulf Mark A Saper schrieb: Wulf et al, I've had similar results to what you report even with a session file

[PyMOL] Displaying/defining double bonds in a ligand molecule

Hello pymolers, I'd like to display double bonds in a small molecule ligand bound to the active centre of a protein. Of course, the ligand is non-standard, i.e. pymol doesn't know about its chemical nature. Googling a bit, I found that I can set valence, 0.1 but this only display double

[PyMOL] Lights in pymol 0.99beta ?

Dear pymolers, I have two questions concerning the new beta version (windows) of pymol. a.) when I load a molecule (or an old session file) colours are very bright, like an over-exposed photograph. This doesn't change with raytracing and I haven't found the button to tame it yet b.) I

[PyMOL] Surface scribing in pymol?

Dear pymolers, is there any simple way to scribe/cut surfaces in pymol, similar to the scribing function in grasp? I'd like to prepare a figure in which I only show a small piece of surface in a certain area of my molecule. Thanks for any help, Wulf -- Dr. Wulf Blankenfeldt Max