[PyMOL] sequence conservation alignment onto structure

Dear All, Is there any way of color coding sequence conservation of a protein onto structure by using multiple sequence alignment and structure in pymol ? Thanks in advance -- Best Regards, Humayun Sharif MS student Protein Structure and Function Laboratory Gwangju Institute Of Science

Re: [PyMOL] sequence conservation alignment onto structure

...@gmail.com wrote: Dear Humayun, On 4 June 2010 13:30, humayun scherrif hum@gmail.com wrote: Dear All, Is there any way of color coding sequence conservation of a protein onto structure by using multiple sequence alignment and structure in pymol ? It might be possible to do

Re: [PyMOL] Symmetry Mates Problem

! Is your protein exactly the same as documented or from a different species? My protein has three different oligomeric states from three different species, and the monomers from different species superpose well. Maia humayun scherrif wrote: Thank you all for the replies. * The protein

Re: [PyMOL] Sruface area (Dimer interface)

/piserver Cheers, Thomas On Tue, 2010-05-18 at 14:02 +0900, humayun scherrif wrote: I have tried to using the method described in http://muralab.org/~cmura/PyMOL/ , but I want to calculate the Dimer Interface area as compared to total area of the Dimer On Tue, May

[PyMOL] Sruface area (Dimer interface)

Hello, I was wondering if anyone can tell me how to calculate the Dimer interface surface area ? Although I have seen related posts, but nothing work out well. Thanks -- Best Regards, Humayun Sharif --

Re: [PyMOL] Sruface area (Dimer interface)

I have tried to using the method described in http://muralab.org/~cmura/PyMOL/ , but I want to calculate the Dimer Interface area as compared to total area of the Dimer On Tue, May 18, 2010 at 1:41 PM, Edward A. Berry ber...@upstate.edu wrote: humayun scherrif wrote: Hello, I