Re: [PyMOL] pymol dies when minimizing
Hi all, I finally got time and access to machine on which this can be produced. Two workarounds I found were: (1) Minimnize PyMOL (2) Maximize PyMOL (3) Click on the openGL window and drag the PyMOL window one or two pixels (4) Click inside the openGL window. Does PyMOL refresh? or (1) Minimnize PyMOL (2) Maximize PyMOL (3) In the upper control panel type: set internal_gui, 0; set internal_gui, 1 Does PyMOL refresh? Do either of these work? If so, use this while I find a real solution. If not, please let me know. Thanks, -- Jason On Wed, Jun 2, 2010 at 5:54 PM, Joel Tyndall joel.tynd...@otago.ac.nz wrote: Hi, Yeah I have a similar issue and have been meaning to post it. On windows 7 following minimization, the viewer doesn’t update when you open it again, no menus either. Using PyMOL 1.2r2 Looking forward to a solution J _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 From: Robin Emig [mailto:re...@pacificbiosciences.com] Sent: Wednesday, 2 June 2010 7:34 a.m. To: pymol-users@lists.sourceforge.net Subject: [PyMOL] pymol dies when minimizing Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol dies when minimizing
Maia and Robin, What version of Windows and PyMOL are you using? Cheers, -- Jason On Wed, Jun 2, 2010 at 10:52 AM, Maia Cherney ch...@ualberta.ca wrote: I had once a problem with pymol that itr would not open from a terminal window. After a long battle with it, the problem was solved after I upgraded my OS. Robin Emig wrote: Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol dies when minimizing
Hi Jason, I had my problem in ubuntu, not windows. I could open pymol only from the education menu (not from a terminal). I wrote several e-mails to pymol list, and nothing helped me. Then incidentally I upgraded my ubuntu from 8.04 to 9.04 and several things started working automatically, such as pymol started to open from a terminal window. Of course, some other programs stopped working etc. Now everything is ok. The pymol version that I have has come with ubuntu package, it's Version 1.1r2pre. Works fine. Maia Jason Vertrees wrote: Maia and Robin, What version of Windows and PyMOL are you using? Cheers, -- Jason On Wed, Jun 2, 2010 at 10:52 AM, Maia Cherney ch...@ualberta.ca wrote: I had once a problem with pymol that itr would not open from a terminal window. After a long battle with it, the problem was solved after I upgraded my OS. Robin Emig wrote: Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol dies when minimizing
Great, glad to hear it works, Maia. For those Windows users with problems, what versions of Windows and PyMOL are you using? Cheers, -- J On Thu, Jun 3, 2010 at 11:47 AM, Maia Cherney ch...@ualberta.ca wrote: Hi Jason, I had my problem in ubuntu, not windows. I could open pymol only from the education menu (not from a terminal). I wrote several e-mails to pymol list, and nothing helped me. Then incidentally I upgraded my ubuntu from 8.04 to 9.04 and several things started working automatically, such as pymol started to open from a terminal window. Of course, some other programs stopped working etc. Now everything is ok. The pymol version that I have has come with ubuntu package, it's Version 1.1r2pre. Works fine. Maia Jason Vertrees wrote: Maia and Robin, What version of Windows and PyMOL are you using? Cheers, -- Jason On Wed, Jun 2, 2010 at 10:52 AM, Maia Cherney ch...@ualberta.ca wrote: I had once a problem with pymol that itr would not open from a terminal window. After a long battle with it, the problem was solved after I upgraded my OS. Robin Emig wrote: Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol dies when minimizing
I had once a problem with pymol that itr would not open from a terminal window. After a long battle with it, the problem was solved after I upgraded my OS. Robin Emig wrote: Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol dies when minimizing
Hi, Yeah I have a similar issue and have been meaning to post it. On windows 7 following minimization, the viewer doesn't update when you open it again, no menus either. Using PyMOL 1.2r2 Looking forward to a solution J _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 From: Robin Emig [mailto:re...@pacificbiosciences.com] Sent: Wednesday, 2 June 2010 7:34 a.m. To: pymol-users@lists.sourceforge.net Subject: [PyMOL] pymol dies when minimizing Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] pymol dies when minimizing
Does anyone else have the problem where pymol dies, or wont update the display after minimizing on windows? Is there a way to fix this? -Robin -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
