, 12 Apr 2021 09:11:37 +0200
From: Tamas Hegedus
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] CCP4 maps not aligning to my PDB file
Message-ID: <7c7d2677-0e52-164b-cea6-d5ed6690b...@gmail.com>
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One way of displaying CCP4-generated maps in Pymol is described on this web
page:
https://sites.google.com/colgate.edu/xrd-protocols/home/visualization-of-protein-models
One way of generating CCP4 maps suitable for use in Pymol is described on
this page:
pls. google
https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/fitmaps/fitmaps.html
https://www.cgl.ucsf.edu/chimera/data/tutorials/emfit09/emfit.html
On 4/12/21 9:25 AM, shubhashish chakraborty wrote:
Hi,
Thank you for a reply.
I am not working with cryo-EM but it's an X-ray
Hi,
Thank you for a reply.
I am not working with cryo-EM but it's an X-ray diffraction map.
A similar kind of problem I am facing in chimera, so what could be done?
Thank you
Shubhashish Chakraborty
PhD Research Scholar (SRF)
Varma Lab
Structural and Molecular biology Lab
Advanced Centre for
Hi,
PyMOL seems not to primarily target working with densities.
I suggest to use Chimera if you work with cryo EM maps.
E.g. you can use it to fit your struct into the density map.
If you decide to use Chimera, be careful, a first step of frustration
could be caused by the extension of the
