Hi Brenton,
You will also need to show the sticks for the sidechain of residue 62:
fetch 1pwc
hide
show cartoon
show sticks, r. pnm
show sticks, resi 62 and not name c+n+o
Cheers,
Tsjerk
On Sat, Apr 4, 2015 at 3:52 PM, Brenton Horne brentonho...@ymail.com
wrote:
Hi,
In the structure that goes by the PDB ID 1PWC (RCSB PDB
http://www.pdb.org/pdb/explore/explore.do?structureId=1PWC, PDBe
http://www.ebi.ac.uk/pdbe-srv/view/entry/1pwc/summary.html, download
link for bio assembly 1 http://www.pdb.org/pdb/files/1PWC.pdb1.gz,
which I am using) PNM
http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=PNM (open chain
benzylpenicillin) is covalently bonded to residue 62 (a serine; I base this
on molecular modelling I've done in Accelrys Discovery Studio Visualizer
[ADSV] and knowledge this is how penicillins interact with this
penicillin-binding protein) but in PyMOL this bonding isn't shown. Is there
any way of rendering the serine (and only the serine, the rest of the
protein I want in cartoon mode) in sticks format and showing the covalent
bond between the serine and PNM?
Thanks for your time,
Brenton
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