Hi Brenton,
You will also need to show the sticks for the sidechain of residue 62:
fetch 1pwc
hide
show cartoon
show sticks, r. pnm
show sticks, resi 62 and not name c+n+o
Cheers,
Tsjerk
On Sat, Apr 4, 2015 at 3:52 PM, Brenton Horne <brentonho...@ymail.com>
wrote:
> Hi,
>
> In the structure that goes by the PDB ID 1PWC (RCSB PDB
> <http://www.pdb.org/pdb/explore/explore.do?structureId=1PWC>, PDBe
> <http://www.ebi.ac.uk/pdbe-srv/view/entry/1pwc/summary.html>, download
> link for bio assembly 1 <http://www.pdb.org/pdb/files/1PWC.pdb1.gz>,
> which I am using) PNM
> <http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=PNM> (open chain
> benzylpenicillin) is covalently bonded to residue 62 (a serine; I base this
> on molecular modelling I've done in Accelrys Discovery Studio Visualizer
> [ADSV] and knowledge this is how penicillins interact with this
> penicillin-binding protein) but in PyMOL this bonding isn't shown. Is there
> any way of rendering the serine (and only the serine, the rest of the
> protein I want in cartoon mode) in sticks format and showing the covalent
> bond between the serine and PNM?
>
> Thanks for your time,
> Brenton
>
>
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--
Tsjerk A. Wassenaar, Ph.D.
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