Hi Yury,
if you have the electron cloud as map data, you can load it into PyMOL
and use any map visualization (volume, isosurface, isomesh). Once the
map is loaded into PyMOL, use the A (Action) button next to the object
name in the object menu panel on the right.
Supported map formats include: xplor, ccp4, phi, dx.
Cheers,
Thomas
Yury Polikanov wrote, On 06/13/13 20:50:
Dear PyMOL users,
I need to visualize sp3-hybridized electron cloud with lone pair of electrons
to
make figure explaining the chemical mechanism of the reaction. Does anyone
know
if it is possible to accomplish with PyMOL???
Any comments or suggestions would be valuable!
Thanks a lot in advance!
Best regards,
Yury
--
Thomas Holder
PyMOL Developer
Schrödinger Contractor
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