Re: [PyMOL] animation showing conformational change

2014-04-09 Thread Thomas Holder
Hi Roger, On 09 Apr 2014, at 14:55, Roger Rowlett wrote: > [...] I don't know how sophisticated PyMols morphing command is, but some > morphing programs simply do a linear interpolation between the starting and > ending states, and that will lead to serious distortion of side chain and > main

Re: [PyMOL] animation showing conformational change

2014-04-09 Thread Roger Rowlett
esday, April 09, 2014 12:34 PM *To:* sunyeping *Cc:* pymol-users *Subject:* Re: [PyMOL] animation showing conformational change Hi Yeping - With incentive PyMOL version 1.6 or later, you can use `morph`. >From what I read at http://pymolwiki.org/index.php/Morph, you'll need to put b

Re: [PyMOL] animation showing conformational change

2014-04-09 Thread Thomas Holder
Hi Jared, On 09 Apr 2014, at 12:33, Sampson, Jared wrote: > With incentive PyMOL version 1.6 or later, you can use `morph`. >From what I > read at http://pymolwiki.org/index.php/Morph, you’ll need to put both > conformations of the protein into one object, as different states. ah, that statem

Re: [PyMOL] animation showing conformational change

2014-04-09 Thread Schubert, Carsten [JRDUS]
2014 12:34 PM To: sunyeping Cc: pymol-users Subject: Re: [PyMOL] animation showing conformational change Hi Yeping - With incentive PyMOL version 1.6 or later, you can use `morph`. >From what I read at http://pymolwiki.org/index.php/Morph, you'll need to put both conformations of the

Re: [PyMOL] animation showing conformational change

2014-04-09 Thread Sampson, Jared
Hi Yeping - With incentive PyMOL version 1.6 or later, you can use `morph`. From what I read at http://pymolwiki.org/index.php/Morph, you’ll need to put both conformations of the protein into one object, as different states. See http://pymolwiki.org/index.php/Load for more info on that. Chee

[PyMOL] animation showing conformational change

2014-04-09 Thread sunyeping
Dear all,If I have the structures representing two conformations of one protein, then could I make a animation movie that shows how the protein transforms from one conformation to the other conformation using pymol? Thanks. Yeping Sun Institute of Microbiology, Chinese Academy of Sciences ---