Rongjin,
PyMOL can certainly color surfaces by atom color and other properties.
show surface
color green, elem c
color violet, elem n+o
But Grasp's hydrophobicity function may be doing something more
sophisticated then that...
Cheers,
Warren
> -Original Message-
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> gu...@umbi.umd.edu
> Sent: Wednesday, February 18, 2004 7:12 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] molecular surface colored by hydrophobicity
>
> Dear all,
> I am preparing a figure of a molecualr surface, colored by
> the hydrophobicity of surface residues. Can pymol do this job?
> How about showing atom C* in a color, and N* and O* in another color?
>
> In fact I have tried GRASP but failed in coloring the
> surface. I used "r=hyd", but could not color the surface of
> those redisues. This is an old version of grasp (1.0?). I am
> not familiar with this program. If anybody can tell me the
> correct way of doing it in grasp, it will also be greatly appreciated.
>
> Rongjin Guan
>
>
>
>
>
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