Re: [PyMOL] Alignment Objects

2009-09-11 Thread Robert Campbell
Hi David On Thu, 10 Sep 2009 14:47:43 -0700 (PDT) David Hall dwash59_2...@yahoo.com wrote: Is there any documentation on getting information out of alignment objects into scripts? I tried looking around the wiki, but I didn't see anything. I'm just wondering things like if I have a residue

Re: [PyMOL] Alignment Objects

2009-09-11 Thread Maia Cherney
Hi, Is it posible in pymol to select all residues of a certain type automatically, like all arginines or all lysines + arginines in a chain? Maia -- Let Crystal Reports handle the reporting - Free Crystal Reports 2008

Re: [PyMOL] Alignment Objects

2009-09-11 Thread Warren DeLano
Maia, select all_arg_lys, resn arn+lys Cheers, Warren -Original Message- From: Maia Cherney [mailto:ch...@ualberta.ca] Sent: Friday, September 11, 2009 2:03 PM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Alignment Objects Hi, Is it posible in pymol to select all

Re: [PyMOL] Alignment Objects

2009-09-11 Thread Nathaniel Echols
On Fri, Sep 11, 2009 at 1:59 PM, Maia Cherney ch...@ualberta.ca wrote: Is it posible in pymol to select all residues of a certain type automatically, like all arginines or all lysines + arginines in a chain? select resnam arg select chain A and (resnam lys or resnam arg)

RE: [PyMOL] Alignment objects

2005-01-28 Thread Warren DeLano
Andreas, It's not a stupid question -- its just a year or more ahead of its time. Right now aligment objects currently don't do anything other than show you which atoms were aligned in the 3D viewer. In time however, those objects will integrate with the sequence-viewer... Cheers, Warren