[PyMOL] color by element

2010-02-09 Thread Ariel Talavera
Hi Pymolers, How can I use the color by element (HNOS) function present in the GUI, in a script? Thanks in advanced, Best, Ariel -- * Ariel Talavera PĂ©rez, PhD Center of Molecular Immunology calle 216 esq. A 15, Atabey, Playa Havana 11600, CUBA

Re: [PyMOL] color by element

2010-02-09 Thread Nathaniel Echols
On Tue, Feb 9, 2010 at 2:46 PM, Ariel Talavera talav...@cim.sld.cu wrote: How can I use the color by element (HNOS) function present in the GUI, in a script? I don't think there's a single command that does this; I've always done something like this: color grey80, elem c color white, elem h

Re: [PyMOL] color by element

2010-02-09 Thread Michael Lerner
have you tried: import util util.cbag util.cbay util.rainbow etc? after you type import util, you can type util. followed by a tab to see the available commands. On Tue, Feb 9, 2010 at 6:09 PM, Nathaniel Echols nathaniel.ech...@gmail.com wrote: On Tue, Feb 9, 2010 at 2:46 PM, Ariel Talavera

Re: [PyMOL] color by element

2010-02-09 Thread David Hall
First of all, there is: color atomic which will do all the colors and for whatever reason does green for carbons Additionally, there's a general class of util.cba? where question mark is replaced by one letter representing the color of carbon. I've been told by people that these are supposed to