Dear All
I'm trying to figure out for myself, what the two labels 'Label Atom
Identifiers ID' and 'Label Atom Identifiers index' mean, or what
the respective difference between the two is. For sure, the numerical
value is very different when I show the labels in a structure. ID seems
to be
...
-- Forwarded message --
From: Tsjerk Wassenaar tsje...@gmail.com
Date: Mon, Oct 25, 2010 at 12:39 PM
Subject: Re: [PyMOL] Question about Iterate and Edit-Mode
To: Martin Hediger ma@bluewin.ch
Hi Martin,
Without diving into the source, I think it is more like:
for i in
Never get used to that only-reply-to-sender policy...
-- Forwarded message --
From: Tsjerk Wassenaar tsje...@gmail.com
Date: Mon, Oct 25, 2010 at 12:30 PM
Subject: Re: [PyMOL] What is the difference between Atom ID and Index
To: Martin Hediger ma@bluewin.ch
Hi Martin,
ID
Thanks Tsjerk (on both occasions).
As a matter of fact, I'm kind of making a living out of writing a Python
script once in a while, so thats no worry ;)
What I was trying to get at was that I was trying to understand how
certain PyMOL scripts work, and naturally from that become able to
improve
Hi Martin Tsjerk,
There is a another difference between the two aside from the
off-by-one characteristic. PyMOL has to keep track of atoms, so a
simple 'index' could work. But, then when the user removes an atom
from the middle of a structure, do we shift indices above it down?
(This could
Hi all,
I'm using PyMOL version 1.3 installed via Fink on my MacBook Pro with Snow
Leopard 10.6.4. I've noticed a strange OS-specific bug when using the
Spaces feature of my Mac while running PyMOL. If I attempt to change Space,
my system appears to do some sort of restart, without actually
Hi Tom - I’ve also experienced this behavior, which led me to a) attempt to
learn not to switch Spaces while using Fink-installed X11 PyMOL (other X11
programs, e.g. CCP4i, appear not to have the same issue); b) make all of my
figures using .pml scripts so that if I’ve changed something it’s
