On Sun, Sep 11, 2011 at 3:59 AM, Thomas Holder
spel...@users.sourceforge.net wrote:
Hi Lina,
have a look at:
http://pymolwiki.org/index.**php/Polarpairshttp://pymolwiki.org/index.php/Polarpairs
it takes two selections and has a state argument.
Thanks for the link.
I still have a
Dear Pymol users,
I want to compare the crystal packing and contacts of two different space
groups of the same protein using pymol. Here's what I did: (1)loaded two
structures; (2) aligned two structures; (3) generated symmetry-related
objects of two structures. However, the symmetry-related
I've never found a clean way to do this - what I do is to save a PDB file
with the original model and the relevant symmetry mates, which I then use
for the alignments. There may be a way to do is with object groups,
however. (FYI, you'll probably also need to rename the chain IDs for the
You have to make .pml file and put the python commands inside pymol blocks.
Try look here for an example.
http://www.pymolwiki.org/index.php/Propka#Mutagenesis_analysis
Troels Emtekær Linnet
Karl-Liebknecht-Straße 53, 2 RE http://maps.google.dk/
04107 Leipzig, Tyskland
Mobil: +49 1577-8944752
Hi.
How hard it is to write a (python?) script that will rotate the figure and
color some atoms? Nothing fancy... I searched a little bit but couldn't find
a quick and dirty tutorial for script writing.
Thanks
--
My other email account has a professional signature.
Well, not hard.
I made a script that can rotate a molecule around a line.
And I made a large tutorial to take one through the available functions of
this script.
It is a pymol command file, .pml.
Check out:
http://www.pymolwiki.org/index.php/Rotkit
Troels Emtekær Linnet
Karl-Liebknecht-Straße
Assuming you're using a recent version of openSUSE (11.3, 11.4, or
Factory), feel free to grab the svn compiled version from
http://software.opensuse.org/download.html?project=devel:languages:pythonpackage=pymol
-David
2011/9/11 Troels Emtekær Linnet tlin...@gmail.com:
This should get you on
Thanks.
I'm sorry but this is too complected. Currently, I can't afford the time to
learn another scripting languish. Consider gnuplot script files, which are
simply a list of gnuplot commands. Sure you can do some sophisticated stuff
but you don't have to. All my files will be simple atom list
