Hi Hasan,
if your structures are identical in sequence (same number of atoms), the
direct way for morphing would be to load them into the same object in
two states and then call rigimol.morph, like this:
from epymol import rigimol
cmd.extend('morph', rigimol.morph)
load conf1.pdb, inobj, 1
l
Dear PyMol users!
I'm looking for the possible way to change some backbone didedral values in
my peptide and dont perturbe the secondary structure of the rest of the
peptide.
E.g I have alpha-helix with sequence x-S-T-G-xI want to make
turn motif in the STG tripeptide only by cha
Hi James,
the modeling capabilities of PyMOL are rather limited, there are
probably more powerful tools for such tasks.
Without guaranty that the result will be reasonable, try this:
# lock all but the STG tripeptide
protect not pepseq STG
# activate sculpting
sculpt_activate all
set sculpting
I am not able to reach the site?
Is it down?
Troels Emtekær Linnet
--
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Hi Troels,
I can get to it. Still having problems?
Cheers,
-- Jason
2012/1/26 Troels Emtekær Linnet :
> I am not able to reach the site?
>
> Is it down?
>
> Troels Emtekær Linnet
>
>
> --
> Keep Your Developer Skills Cu
James-
I think you need to seriously consider using software that's actually
designed to compute and refine protein models, such as Modeller. There
are forcefield and structural constraints that PyMol is just not
designed to do, and your results may not have the scientific validity
you require
Dear Thomas, Jed!
Firstly, thanks for the advise in further days I'll try Modeller software!
But also I've tried to use above advises in PyMol and in general I was
satisfy with the results.
I have just only several questions
1- What exactly is the Sculpping ? As I've understood its something l
No. :-)
Works as a charm now.
It was a temporary thing for 10 minutes.
Maybe my internet solution from the uni was a little "strange".
/T
2012/1/27 Jason Vertrees
> Hi Troels,
>
> I can get to it. Still having problems?
>
> Cheers,
>
> -- Jason
>
> 2012/1/26 Troels Emtekær Linnet :
> > I am
