Hi Annemarie,
Have you tried the following?
cmd.translate([x,y,z], object='membrane')
replace x,y,z with your translation vector.
Cheers,
Julian
On Sat, Jan 30, 2016 at 8:33 AM, Honegger Annemarie
wrote:
> I am trying to show some cell surface receptors and to indicate
Hi,
have a look at the 'align' command:
http://pymolwiki.org/index.php/Align
Best,
Julian
On Thu, Jan 28, 2016 at 7:13 AM, leila karami
wrote:
> Dear pymol users,
>
> I have 2 ligand molecules having similar backbone. There is little
> difference between them. When I
Dear all:
I'm ray tracing images from a script with the png command, but am having
problems saving images larger than ~ 6000x6000. While I get perfect images
at 6000x6000, anything larger writes small, empty files (219kb instead of
~50Mb like expected). Is there some sort of buffer size that
Colleagues,
When I load an amber topology file and associated trajectory file, the lines
for all heteroatoms are drawn as dashed lines (but bonds to hydrogens drawn as
solid lines).
I can’t seem to find a flag that would turn this feature off… I’d rather see
all bonded atoms connected as
Hi Mike,
These bonds have bond order zero. Incentive PyMOL 1.8 renders those as dashed
lines and sticks. Previous versions of PyMOL had no proper support for
zero-order bonds, they did render as solid lines, but had no stick
representation.
You can set all bond orders to 1 with:
PyMOL>valence
Hi Annemarie,
It's actually quite simple to generate a real membrane around your protein
and, e.g., to show the head groups. Do you have a PDB ID for the protein,
or are they in-house models?
Cheers,
Tsjerk
On Mon, Feb 1, 2016 at 10:57 PM, Julian Heinrich wrote:
> Hi
Can I load the gromacs trajectory files or just the amber trajectory files?
On Monday, February 1, 2016 10:17 PM, mohammad r
wrote:
Hi everybody,
How can I load a gromacs trajectory file in PyMOL?
Thank you, Mohammad.
Hi everybody,
How can I load a gromacs trajectory file in PyMOL?
Thank you, Mohammad.--
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Dear list,
Moving a bit further with this, I have been trying to find an easy way to
iterate through the list of scene names. Or to get them somehow.
I don't seem to be able to find any information about this and thought
someone probably already knew.
Thanks in advance!
Folmer
2016-01-27 14:07