Dear Bioc Developer,
I would like to add another person as developer and maintainer of my package
IsoGeneGUI. Please let me know the procedure for that. Look forward to your
suggestion. Thank you.
Best regards,
Setia
___
Bioc-devel@r-project.org
Dear Setia
just edit the “DESCRIPTION” file.
For maintainers, note the CRAN Repository Policy at
http://cran.r-project.org/web/packages/policies.html which I think we generally
also apply in Bioconductor: The package’s DESCRIPTION file must show both the
name and email address of a single
Hi Setia,
you will probably also need an account with write permissions to the
package SVN for the new maintainer. For this its probably best to
contact Dan Tenenbaum dtene...@fhcrc.org
Cheers,
Andrzej
On Fri, Oct 3, 2014 at 11:48 AM, Wolfgang Huber whu...@embl.de wrote:
Dear Setia
just edit
Hello
Is it possible to use (RStudio's) rmarkdown package as a vignette
builder for the upcoming release?
ie, with the (at least locally working) configuration
DESCRIPTION
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
vignette/vignette.Rmd
---
title: ...
Hi Gordon,
Sean Davis has something about this on his blog:
http://watson.nci.nih.gov/~sdavis/blog/convert_from_sweave_to_r_markdown_vignettes/
Best,
Jim
On Fri, Oct 3, 2014 at 9:06 AM, Gordon Ball gordon.b...@ki.se wrote:
Hello
Is it possible to use (RStudio's) rmarkdown package as a
- Original Message -
From: Henrik Bengtsson h...@biostat.ucsf.edu
To: jmac...@u.washington.edu
Cc: bioc-devel@r-project.org
Sent: Friday, October 3, 2014 6:56:59 AM
Subject: Re: [Bioc-devel] RMarkdown for vignettes
I think it requires Bioc core to make a statement that pandoc
On Thu, 02-10-2014, at 22:42, Hervé Pagès hpa...@fhcrc.org wrote:
Hi,
This makes a lot of sense. I also find a bit disturbing that the main
text cannot immediately be distinguished from other things like captions
or page headers (BiocStyle places the title of the vignette at the top
of
Hi Gordon, James,
thank you for pointing this out! At the time BiocStyle for markdown
documents was developed 'rmarkdown' was not yet on CRAN and couldn't
be used as a vignette builder engine.
As things changed in the meantime, the approach described by Gordon
should be just fine. I will update
Added a new vignette to GenomicRanges that explains this stuff.
On Mon, Sep 29, 2014 at 6:54 PM, Michael Lawrence micha...@gene.com wrote:
I admit negligence in not document this. But if you look at VRanges, you
can see how we set a method for extraColumnSlotNames returns a character
vector
Dear all,
I'm updating a package regarding a new type of models, and I'm looking to
extend the formula interface with two functions (L() and R() ) for
construction of these models. I want to use as much of the formula
interface as possible, and hoped to do something similarly to I().
I know the
On 03 Oct 2014, at 14:32 , Joris Meys jorism...@gmail.com wrote:
Dear all,
I'm updating a package regarding a new type of models, and I'm looking to
extend the formula interface with two functions (L() and R() ) for
construction of these models. I want to use as much of the formula
Thanks Peter! That clarifies why it felt I was chasing ghosts these past
days :) Thanks for the tip about coxph as well, there's some nice ideas to
be discovered there.
Cheers
Joris
On Fri, Oct 3, 2014 at 3:02 PM, peter dalgaard pda...@gmail.com wrote:
On 03 Oct 2014, at 14:32 , Joris Meys
On Thu, Oct 2, 2014 at 4:25 PM, Ei-ji Nakama nak...@ki.rim.or.jp wrote:
Hello
The value generated by Fortran's .TRUE. evaluates as truthy -- as in
all(z[[1]]) -- but is neither equal to nor identical to TRUE. Its numeric
conversion to -1 is most unusual, every other system I've tried
A question I meant to ask for a very long time:
I have several functions that temporarily open files using file(...,
open=rb). I'd like to support gzip'ed files also and noticed that
gzfile(..., open=rb) handles also non-compressed files, cf.
help(gzfile):
For 'gzfile' the description is the
Dear mac folks,
I have started porting a large legacy toolset maintained in windows
and heavily mpi laden so it can be used across platforms in R... so I
am building a package out of it. On this note, I am noticing that
almost all of the mpi dependent packages do not compile on the CRAN
On 10/03/2014 04:17 PM, Daniel Fuka wrote:
Dear mac folks,
I have started porting a large legacy toolset maintained in windows
and heavily mpi laden so it can be used across platforms in R... so I
am building a package out of it. On this note, I am noticing that
almost all of the mpi dependent
On 10/03/2014 04:58 PM, Martin Morgan wrote:
On 10/03/2014 04:17 PM, Daniel Fuka wrote:
Dear mac folks,
I have started porting a large legacy toolset maintained in windows
and heavily mpi laden so it can be used across platforms in R... so I
am building a package out of it. On this note, I am
Daniel,
On Oct 3, 2014, at 7:17 PM, Daniel Fuka dr...@cornell.edu wrote:
Dear mac folks,
I have started porting a large legacy toolset maintained in windows
and heavily mpi laden so it can be used across platforms in R... so I
am building a package out of it. On this note, I am noticing
FYI
https://groups.google.com/forum/#!topic/rbigdataprogramming/k1uZWmzd1L8
or FAQ, Section 8.3, question 10 at
https://github.com/snoweye/pbdMPI/blob/master/inst/doc/pbdMPI-guide.pdf?raw=true
may be useful.
On Fri, Oct 3, 2014 at 9:10 PM, Simon Urbanek simon.urba...@r-project.org
wrote:
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