On 7/28/2015 1:32 PM, Uwe Ligges wrote:
Just add the line
R_LIBS_SITE=F:/R/library
to the file R_HOME/etc/x64/Renviron.site
Thanks, Uwe
I have no way to test this and our IT people who do the installation
know nothing of R, so follow-up questions:
* There is no
On 7/19/2015 3:50 AM, peter dalgaard wrote:
For some, but not allI repositories I get the error message below:
Error in install.packages(update[instlib == l, Package], l, contriburl =
contriburl, :
specifying 'contriburl' or 'available' requires a single type, not type =
both
Is it a bug?
On 29/07/2015 12:13 PM, Jim Hester wrote:
I would like to map the parsed tokens obtained from utils::getParseData()
to the parse tree and elements obtained by base::parse().
It looks like back when this code was in the parser package the parse()
function annotated the elements in the tree with
On 29.07.2015 17:11, Michael Friendly wrote:
On 7/28/2015 1:32 PM, Uwe Ligges wrote:
Just add the line
R_LIBS_SITE=F:/R/library
to the file R_HOME/etc/x64/Renviron.site
Thanks, Uwe
I have no way to test this and our IT people who do the installation
know nothing of R, so follow-up
A simple formatting issue:
Since support for table of contents in R markdown vignettes has become
available, it seems like an amazing solution for many online
documentation needs in the future.
What would help me to fully to adopt to it, is a solution to get rid of
the bullets in a numbered
As Michael guessed my main use cases was code analysis. A concrete example
where this would help is with my test code coverage tool covr. There is
currently a bug when tracking coverage for if / else statements when the
clauses do not contain brackets
Hi all,
I'm having trouble creating a DEXSeqDataSet object (in the devel
version of DEXSeq)
Running the example included in the manual page results in the same
error I get with my own data (see below)
Many thanks for your help.
Leonard
library(DEXSeq)
countData - matrix( rpois(1, 100),
Done in BiocGenerics 0.15.4.
H.
On 07/29/2015 11:00 AM, Hervé Pagès wrote:
Hi Steve,
On 07/29/2015 10:40 AM, Steve Lianoglou wrote:
Hi folks,
I'm looking to define a `subset` method on an S4 class of mine, but
can't find where to import the generic from.
That's because subset() is an
On 29/07/2015 12:55 PM, Michael Friendly wrote:
On 7/19/2015 3:50 AM, peter dalgaard wrote:
For some, but not allI repositories I get the error message below:
Error in install.packages(update[instlib == l, Package], l, contriburl =
contriburl, :
specifying 'contriburl' or 'available'
From base, according to my R console:
subset
standardGeneric for subset defined from package base
function (x, ...)
standardGeneric(subset)
environment: 0x4eb60c8
Methods may be defined for arguments: x
Use showMethods(subset) for currently available ones.
On 07/29/2015 10:40 AM, Steve
Hi folks,
I'm looking to define a `subset` method on an S4 class of mine, but
can't find where to import the generic from.
I can't seem to find it anywhere in:
* BiocGenerics
* S4Vectors
* XVector (
Even though S4Vectors has a:
setMethod(subset, DataTable, ...)
It's not clear to me
I am about to retire from my 'day job' and will therefore have little
further association with acadaemia/research in general or R in
particular. I am currently maintainer for the 3 mapping packages maps,
mapdata and mapproj.
Is there anyone out there who would be willing to take this on?
I
Hi Steve,
On 07/29/2015 10:40 AM, Steve Lianoglou wrote:
Hi folks,
I'm looking to define a `subset` method on an S4 class of mine, but
can't find where to import the generic from.
That's because subset() is an implicit generic, that is, there is no
setGeneric statement for it, only setMethod
On 29/07/2015 2:30 PM, Michael Lawrence wrote:
Probably need a generic tree based on ParseNode objects that
associate the line information with the symbol (for leaf nodes). As
Duncan notes, it should be possible to gather that from the table.
But it would be nice if there was an expr column in
Both codetools and compiler get by without this. codetools uses source
refs to generate messages; I don't recall if compiler does but it
could easily do so. I would be wary about committing to this sort of
implementation specific stuff -- we might want to go to completely
different parser
I agree that we don't want to depend on implementation details. Some
sort of abstraction that is higher resolution than srcrefs would be
nice. Right now, it would be inconvenient using srcrefs to get to the
exact column range of a symbol, for example, but an IDE wants that to
highlight the symbol.
What exactly do you mean by numbering. As far as I understand, numbering
is already there in devel:
https://bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html
Kasper
On Wed, Jul 29, 2015 at 10:39 PM, Thomas Girke thomas.gi...@ucr.edu wrote:
Perfect, if your
When I roll that styles.css into the bioconductor.css file shipping with
BiocStyle, it gets rid of the bullets.
Its added to BiocStyle 1.7.5
Kasper
On Wed, Jul 29, 2015 at 9:37 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
This is just reporting what I see using Bioc-devel:
Perfect, if your update in Bioc-devel eliminates the awkward bullets in
front of the numbers. The lack of numbered content tables in Bioc-release
may be something we have to live with until the next Bioc release? I don't
want to overstretch Dan's or the Bioc team's patience with overly picky
style
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