Re: [Bioc-devel] R logo in help files

Brilliant, Thanks for the thread Martin. Exactly what I needed. According to Duncan Murdoch, its an RStudio bug (https://stat.ethz.ch/pipermail/r-help/2016-March/437415.html). This fix worked from the same thread fixed the issue https://stat.ethz.ch/pipermail/r-help/2016-March/437397.html

Re: [Bioc-devel] R logo in help files

On 05/18/2016 06:40 PM, Aedin Culhane wrote: Hi The R logo, in Bioc help files is very large when viewed in RStudio help window. I don't see the same, when I view R help files. See enclosed images. I see only big logos; there is this thread

Re: [Rd] Latest R-devel build failing on OS X

Readline <= 6.2 shouldn't require the SIGWINCH patch, so if older versions have trouble finding rl_resize_terminal then you could wrap a macro around that part. The isearch C-c bug has existed forever, according to Chet Ramey. Yes, I had to retrain myself to use C-g to exit isearch but it's

Re: [Rd] Latest R-devel build failing on OS X

Spoke too soon, both systems now build, but neither has the original bugs fixed (Incidentally, I realized why the ctl-R...ctl-C bug never bit me: The emacs habit is to exit isearch with ctl-G and that works flawlessly.) -pd > On 18 May 2016, at 22:40 , peter dalgaard

Re: [Rd] Latest R-devel build failing on OS X

Ah, got it. For some ancient reason config.site on that machine had LDFLAGS=-L/usr/X11R6/lib in config.site, and that prevented configure from inserting -L /usr/local/lib, so linked /usr/lib/libreadline.dylib, which is the Apple-supplied one, which possibly is really libedit... -p > On 18

Re: [Rd] Latest R-devel build failing on OS X

> On 18 May 2016, at 18:54 , Martin Maechler wrote: > > >> Yes, the nightly build is broken in a similar, but different way. See below. >> Both seem to be readline related, so Frederick Eaton's patches, which Martin >> committed yesterday are the likely culprit. I

Re: [Rd] Latest R-devel build failing on OS X

Thanks for the fix, Martin. The build runs smoothly now, with just a warning remaining: sys-std.c:1002:7: warning: implicit declaration of function 'rl_resize_terminal' is invalid in C99 [-Wimplicit-function-declaration] rl_resize_terminal(); ^ 1

Re: [Rd] Latest R-devel build failing on OS X

> Yes, the nightly build is broken in a similar, but different way. See below. > Both seem to be readline related, so Frederick Eaton's patches, which Martin > committed yesterday are the likely culprit. I had actually tested them and > things seemed to work, but it was on a different machine

Re: [Rd] Latest R-devel build failing on OS X

Yes, the nightly build is broken in a similar, but different way. See below. Both seem to be readline related, so Frederick Eaton's patches, which Martin committed yesterday are the likely culprit. I had actually tested them and things seemed to work, but it was on a different machine and not

[Rd] Latest R-devel build failing on OS X

Dear R-devel, The latest version of R-devel (05-17) is throwing an error for me when building on OS X (v 10.11.4): making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d

Re: [Rd] [patch] Error in reg-tests-1c.R (R-devel)

On 18/05/16 13:50, Martin Maechler wrote: Mikko Korpela on Wed, 18 May 2016 13:05:24 +0300 writes: > I get an error when running "make check" after building > R-devel r70629 on Ubuntu 14.04. > Here are the relevant > lines in the file

Re: [Rd] [patch] Error in reg-tests-1c.R (R-devel)

G'day Martin, On Wed, 18 May 2016 12:50:21 +0200 Martin Maechler wrote: > > Mikko Korpela > > on Wed, 18 May 2016 13:05:24 +0300 writes: > > > I get an error when running "make check" after building > > R-devel r70629

Re: [Rd] [patch] Error in reg-tests-1c.R (R-devel)

> Mikko Korpela > on Wed, 18 May 2016 13:05:24 +0300 writes: > I get an error when running "make check" after building > R-devel r70629 on Ubuntu 14.04. > Here are the relevant > lines in the file "reg-tests-1c.Rout.fail": >> ##

[Rd] gcc optimization

Hi, I have noticed that the run times for MCMCglmm models (mainly written in C/C++) have suddenly jumped up on Linux machines (Ubuntu/Linaro 4.6.4 and Scientific Linux 6.6) yet they have remained stable on Windows where they run much faster than on Linux. I wondered whether something had

[Rd] [patch] Error in reg-tests-1c.R (R-devel)

I get an error when running "make check" after building R-devel r70629 on Ubuntu 14.04. Here are the relevant lines in the file "reg-tests-1c.Rout.fail": > ## m1z uses match(x, *) with length(x) == 1 and failed in R 3.3.0 > ## PR#16909 - a consequence of the match() bug; check here too: