Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

Not clear to me what's going on, I'm not a knitr/rmarkdown expert. What I see is that knitr suggests webshot probably because it needs it in some situations. That must be a rare situation though because webshot is not installed on our build machines, which means that none of the 1298 software

Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

Thank you both. Could you also advice me on the error I'm receiving on oaxaca? "there is no package called 'webshot'" New build report: http://bioconductor.org/spb_reports/chimeraviz_ buildreport_20161207152203.html On Wed, Dec 7, 2016 at 7:42 PM, Hervé Pagès wrote: > Hi

Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

Hi Stian, The build machines used by the SPB are the same as the machines used for the daily builds and they already have the latest BiocStyle installed (BiocStyle 2.3.23). You can see this by going on the daily build report for devel and clicking on any of the link in the "Installed pkgs"

Re: [Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

Hi Stian, Install BiocStyle 2.3.20 or newer and that error will go away. See https://github.com/Bioconductor/BiocStyle/issues/20 for details. Best, Leo On Wed, Dec 7, 2016 at 7:44 AM, Stian Lågstad wrote: > Hi, > > Could someone please advice me on the errors I'm

Re: [Rd] Strange behavior when using progress bar (Fwd: Re: [R] The code itself disappears after starting to execute the for loop)

On 12/7/2016 11:58 AM, Martin Maechler wrote: Jon Skoien on Wed, 7 Dec 2016 11:04:04 +0100 writes: >> Is this only a problem for a few, or is it reproducible? Any hints to >> what the problem could be, or if it can be fixed? I have seen this in

Re: [Rd] Strange behavior when using progress bar (Fwd: Re: [R] The code itself disappears after starting to execute the for loop)

Dear Martin and Jon, I can reproduce this problem in the Windows GUI, where I observed it using Jon's program after 75 iterations. I didn't observe the problem in a Windows terminal or under RStudio, letting the program run for more than 200 iterations in each case. My system and session

[Bioc-devel] Advice on build error related to webshot, and possibly related to rmarkdown?

Hi, Could someone please advice me on the errors I'm getting building my package? I'm unable to reproduce them locally. Link to build report: http://bioconductor.org/spb_reports/chimeraviz_buildreport_20161130173413.html Link to bioconductor submission issue:

Re: [Rd] Strange behavior when using progress bar (Fwd: Re: [R] The code itself disappears after starting to execute the for loop)

> Jon Skoien > on Wed, 7 Dec 2016 11:04:04 +0100 writes: > I would like to ask once more if this is reproducible also for others? > If yes, should I submit it as a bug-report? > Best, > Jon Please Windows users .. this is possibly only

Re: [Rd] Strange behavior when using progress bar (Fwd: Re: [R] The code itself disappears after starting to execute the for loop)

I would like to ask once more if this is reproducible also for others? If yes, should I submit it as a bug-report? Best, Jon On 11/28/2016 11:26 AM, Jon Skoien wrote: I first answered to the email below in r-help, but as I did not see any response, and it looks like a bug/unwanted behavior, I